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Mutant Information

Mutant Name	FN2795-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2795-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 69

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16124408 T-A Hetero INTERGENIC
SBS Chr1 16216899 G-C Hetero INTERGENIC
SBS Chr1 16537424 G-T Hetero INTERGENIC
SBS Chr1 17010415 G-A Hetero INTERGENIC
SBS Chr1 19815604 G-T Hetero INTERGENIC
SBS Chr1 23252985 T-A Homo INTERGENIC
SBS Chr1 31093305 G-T Hetero INTERGENIC
SBS Chr2 2531287 G-A Hetero INTERGENIC
SBS Chr2 6061697 A-G Hetero INTERGENIC
SBS Chr2 10038492 C-T Hetero UTR_3_PRIME
SBS Chr2 10275622 C-A Hetero INTERGENIC
SBS Chr2 14154470 G-T Hetero INTERGENIC
SBS Chr3 26889900 G-T Hetero INTERGENIC
SBS Chr3 32088851 T-A Hetero INTERGENIC
SBS Chr4 153040 G-C Hetero INTERGENIC
SBS Chr4 807627 A-G Hetero INTERGENIC
SBS Chr4 1515287 G-T Hetero INTERGENIC
SBS Chr4 1515288 C-T Hetero INTERGENIC
SBS Chr4 2134834 G-A Hetero INTERGENIC
SBS Chr4 8291424 G-T Hetero INTRON
SBS Chr4 10808990 C-G Hetero INTERGENIC
SBS Chr4 14492006 G-A Hetero INTERGENIC
SBS Chr4 16428259 G-A Hetero INTERGENIC
SBS Chr4 18807115 G-A Hetero INTERGENIC
SBS Chr4 25294846 G-A Hetero INTRON
SBS Chr5 3446476 G-T Hetero INTERGENIC
SBS Chr5 4756333 C-T Hetero INTERGENIC
SBS Chr5 10292748 A-T Hetero INTERGENIC
SBS Chr5 10292749 G-A Hetero INTERGENIC
SBS Chr5 14068890 A-T Homo INTERGENIC
SBS Chr5 14068891 G-T Homo INTERGENIC
SBS Chr5 16128109 T-C Homo INTERGENIC
SBS Chr5 24738731 G-A Hetero INTERGENIC
SBS Chr5 27179293 A-T Hetero UTR_5_PRIME
SBS Chr5 28227885 T-C Hetero INTERGENIC
SBS Chr6 2495275 C-A Hetero INTERGENIC
SBS Chr6 2693649 C-T Hetero INTERGENIC
SBS Chr6 4003869 A-G Hetero UTR_5_PRIME
SBS Chr6 21964742 G-T Homo INTERGENIC
SBS Chr6 23234139 G-T Hetero INTERGENIC
SBS Chr7 24111298 G-T Hetero INTRON
SBS Chr8 163294 T-C Homo INTERGENIC
SBS Chr8 2850797 G-T Hetero INTERGENIC
SBS Chr8 3488504 G-T Hetero INTERGENIC
SBS Chr8 7864083 C-T Hetero INTERGENIC
SBS Chr8 8046262 G-A Hetero INTERGENIC
SBS Chr8 14608539 G-T Hetero INTRON
SBS Chr8 22089336 C-T Hetero INTERGENIC
SBS Chr8 26920487 C-T Hetero INTERGENIC
SBS Chr8 27667321 G-A Hetero UTR_3_PRIME
SBS Chr9 6283551 C-G Hetero INTERGENIC
SBS Chr9 14649525 C-A Hetero INTERGENIC
SBS Chr9 15248017 T-C Hetero INTERGENIC
SBS Chr9 17012909 C-A Hetero INTERGENIC
SBS Chr9 21355010 C-A Hetero INTRON
SBS Chr10 1515052 A-C Hetero INTERGENIC
SBS Chr10 3893453 G-A Hetero INTERGENIC
SBS Chr11 4378218 C-T Hetero INTERGENIC
SBS Chr11 4378219 T-C Hetero INTERGENIC
SBS Chr11 4420893 A-G Hetero INTRON
SBS Chr11 9864838 T-A Hetero INTERGENIC
SBS Chr11 12336652 G-T Hetero INTERGENIC
SBS Chr11 20837536 G-C Hetero INTERGENIC
SBS Chr11 21380895 G-T Hetero INTERGENIC
SBS Chr11 22635830 G-T Hetero INTRON
SBS Chr12 9840518 G-T Hetero INTERGENIC
SBS Chr12 13739467 G-A Hetero INTERGENIC
SBS Chr12 17396643 C-T Hetero INTERGENIC
SBS Chr12 24089197 C-T Homo INTERGENIC

Deletions: 29

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1873942 1873949 7
Deletion Chr8 3116485 3116489 4 OsKitaake08g035200
Deletion Chr12 3469715 3469716 1
Deletion Chr5 3504286 3504303 17
Deletion Chr8 5911892 5911893 1
Deletion Chr12 11313298 11313310 12
Deletion Chr1 11600493 11600495 2
Deletion Chr11 12030710 12030713 3
Deletion Chr10 12779001 13160000 380999 20
Deletion Chr10 13163001 13623000 459999 26
Deletion Chr4 14450001 14482000 31999 OsKitaake04g068500
Deletion Chr7 14532718 14532722 4
Deletion Chr2 14750001 14761000 10999
Deletion Chr9 16473649 16473676 27
Deletion Chr3 19274001 19338000 63999
Deletion Chr4 21609940 21609941 1
Deletion Chr11 22117383 22117384 1
Deletion Chr10 22364972 22364976 4
Deletion Chr1 23254001 23270000 15999 OsKitaake01g222400
Deletion Chr6 24861879 24861880 1
Deletion Chr11 26632622 26632647 25
Deletion Chr4 27453548 27453549 1
Deletion Chr1 27730093 27730122 29
Deletion Chr11 27831734 27831736 2
Deletion Chr6 27920001 27934000 13999 OsKitaake06g253400
Deletion Chr6 28034001 28048000 13999
Deletion Chr3 28584001 28595000 10999 OsKitaake03g296500
Deletion Chr2 32262521 32262534 13
Deletion Chr2 36179414 36179418 4

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 26828356 26828359 2
Insertion Chr2 28849671 28849673 1

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 19560749 Chr6 4990444 2
Translocation Chr9 19561226 Chr8 27763436 2
Translocation Chr9 19561228 Chr8 27762568 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16124408	T-A	Hetero	INTERGENIC
SBS	Chr1	16216899	G-C	Hetero	INTERGENIC
SBS	Chr1	16537424	G-T	Hetero	INTERGENIC
SBS	Chr1	17010415	G-A	Hetero	INTERGENIC
SBS	Chr1	19815604	G-T	Hetero	INTERGENIC
SBS	Chr1	23252985	T-A	Homo	INTERGENIC
SBS	Chr1	31093305	G-T	Hetero	INTERGENIC
SBS	Chr2	2531287	G-A	Hetero	INTERGENIC
SBS	Chr2	6061697	A-G	Hetero	INTERGENIC
SBS	Chr2	10038492	C-T	Hetero	UTR_3_PRIME
SBS	Chr2	10275622	C-A	Hetero	INTERGENIC
SBS	Chr2	14154470	G-T	Hetero	INTERGENIC
SBS	Chr3	26889900	G-T	Hetero	INTERGENIC
SBS	Chr3	32088851	T-A	Hetero	INTERGENIC
SBS	Chr4	153040	G-C	Hetero	INTERGENIC
SBS	Chr4	807627	A-G	Hetero	INTERGENIC
SBS	Chr4	1515287	G-T	Hetero	INTERGENIC
SBS	Chr4	1515288	C-T	Hetero	INTERGENIC
SBS	Chr4	2134834	G-A	Hetero	INTERGENIC
SBS	Chr4	8291424	G-T	Hetero	INTRON
SBS	Chr4	10808990	C-G	Hetero	INTERGENIC
SBS	Chr4	14492006	G-A	Hetero	INTERGENIC
SBS	Chr4	16428259	G-A	Hetero	INTERGENIC
SBS	Chr4	18807115	G-A	Hetero	INTERGENIC
SBS	Chr4	25294846	G-A	Hetero	INTRON
SBS	Chr5	3446476	G-T	Hetero	INTERGENIC
SBS	Chr5	4756333	C-T	Hetero	INTERGENIC
SBS	Chr5	10292748	A-T	Hetero	INTERGENIC
SBS	Chr5	10292749	G-A	Hetero	INTERGENIC
SBS	Chr5	14068890	A-T	Homo	INTERGENIC
SBS	Chr5	14068891	G-T	Homo	INTERGENIC
SBS	Chr5	16128109	T-C	Homo	INTERGENIC
SBS	Chr5	24738731	G-A	Hetero	INTERGENIC
SBS	Chr5	27179293	A-T	Hetero	UTR_5_PRIME
SBS	Chr5	28227885	T-C	Hetero	INTERGENIC
SBS	Chr6	2495275	C-A	Hetero	INTERGENIC
SBS	Chr6	2693649	C-T	Hetero	INTERGENIC
SBS	Chr6	4003869	A-G	Hetero	UTR_5_PRIME
SBS	Chr6	21964742	G-T	Homo	INTERGENIC
SBS	Chr6	23234139	G-T	Hetero	INTERGENIC
SBS	Chr7	24111298	G-T	Hetero	INTRON
SBS	Chr8	163294	T-C	Homo	INTERGENIC
SBS	Chr8	2850797	G-T	Hetero	INTERGENIC
SBS	Chr8	3488504	G-T	Hetero	INTERGENIC
SBS	Chr8	7864083	C-T	Hetero	INTERGENIC
SBS	Chr8	8046262	G-A	Hetero	INTERGENIC
SBS	Chr8	14608539	G-T	Hetero	INTRON
SBS	Chr8	22089336	C-T	Hetero	INTERGENIC
SBS	Chr8	26920487	C-T	Hetero	INTERGENIC
SBS	Chr8	27667321	G-A	Hetero	UTR_3_PRIME
SBS	Chr9	6283551	C-G	Hetero	INTERGENIC
SBS	Chr9	14649525	C-A	Hetero	INTERGENIC
SBS	Chr9	15248017	T-C	Hetero	INTERGENIC
SBS	Chr9	17012909	C-A	Hetero	INTERGENIC
SBS	Chr9	21355010	C-A	Hetero	INTRON
SBS	Chr10	1515052	A-C	Hetero	INTERGENIC
SBS	Chr10	3893453	G-A	Hetero	INTERGENIC
SBS	Chr11	4378218	C-T	Hetero	INTERGENIC
SBS	Chr11	4378219	T-C	Hetero	INTERGENIC
SBS	Chr11	4420893	A-G	Hetero	INTRON
SBS	Chr11	9864838	T-A	Hetero	INTERGENIC
SBS	Chr11	12336652	G-T	Hetero	INTERGENIC
SBS	Chr11	20837536	G-C	Hetero	INTERGENIC
SBS	Chr11	21380895	G-T	Hetero	INTERGENIC
SBS	Chr11	22635830	G-T	Hetero	INTRON
SBS	Chr12	9840518	G-T	Hetero	INTERGENIC
SBS	Chr12	13739467	G-A	Hetero	INTERGENIC
SBS	Chr12	17396643	C-T	Hetero	INTERGENIC
SBS	Chr12	24089197	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1873942	1873949	7
Deletion	Chr8	3116485	3116489	4	OsKitaake08g035200
Deletion	Chr12	3469715	3469716	1
Deletion	Chr5	3504286	3504303	17
Deletion	Chr8	5911892	5911893	1
Deletion	Chr12	11313298	11313310	12
Deletion	Chr1	11600493	11600495	2
Deletion	Chr11	12030710	12030713	3
Deletion	Chr10	12779001	13160000	380999	20
Deletion	Chr10	13163001	13623000	459999	26
Deletion	Chr4	14450001	14482000	31999	OsKitaake04g068500
Deletion	Chr7	14532718	14532722	4
Deletion	Chr2	14750001	14761000	10999
Deletion	Chr9	16473649	16473676	27
Deletion	Chr3	19274001	19338000	63999
Deletion	Chr4	21609940	21609941	1
Deletion	Chr11	22117383	22117384	1
Deletion	Chr10	22364972	22364976	4
Deletion	Chr1	23254001	23270000	15999	OsKitaake01g222400
Deletion	Chr6	24861879	24861880	1
Deletion	Chr11	26632622	26632647	25
Deletion	Chr4	27453548	27453549	1
Deletion	Chr1	27730093	27730122	29
Deletion	Chr11	27831734	27831736	2
Deletion	Chr6	27920001	27934000	13999	OsKitaake06g253400
Deletion	Chr6	28034001	28048000	13999
Deletion	Chr3	28584001	28595000	10999	OsKitaake03g296500
Deletion	Chr2	32262521	32262534	13
Deletion	Chr2	36179414	36179418	4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	19560749	Chr6	4990444	2
Translocation	Chr9	19561226	Chr8	27763436	2
Translocation	Chr9	19561228	Chr8	27762568	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes