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Mutant Information

Mutant Name	FN2797-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2797-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 48

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10554934 A-C Hetero INTERGENIC
SBS Chr1 20235519 G-A Hetero INTERGENIC
SBS Chr1 27656164 G-T Hetero INTERGENIC
SBS Chr2 15018348 G-A Homo INTERGENIC
SBS Chr2 15557993 A-G Homo INTERGENIC
SBS Chr2 21130470 G-A Homo INTERGENIC
SBS Chr2 24513244 G-T Hetero INTERGENIC
SBS Chr2 29261285 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g294200
SBS Chr2 31397645 C-T Hetero INTERGENIC
SBS Chr2 31652419 G-A Homo INTERGENIC
SBS Chr3 8528907 A-T Hetero INTERGENIC
SBS Chr3 24169765 G-A Hetero INTERGENIC
SBS Chr3 32673495 A-G Hetero UTR_3_PRIME
SBS Chr3 33194966 G-T Hetero INTERGENIC
SBS Chr3 35391244 G-T Hetero INTERGENIC
SBS Chr4 10809815 C-G Hetero INTERGENIC
SBS Chr4 18513715 G-A Hetero INTERGENIC
SBS Chr4 20053121 A-G Hetero INTRON
SBS Chr4 23208564 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g141700
SBS Chr4 29162105 G-T Hetero INTERGENIC
SBS Chr4 29162106 G-T Hetero INTERGENIC
SBS Chr5 4739472 C-T Hetero INTERGENIC
SBS Chr5 5719799 C-A Hetero INTERGENIC
SBS Chr5 22684149 G-A Homo INTERGENIC
SBS Chr5 22805905 C-A Hetero INTERGENIC
SBS Chr6 2690984 G-A Homo INTERGENIC
SBS Chr6 8968775 G-A Hetero INTRON
SBS Chr6 13649942 G-T Hetero INTERGENIC
SBS Chr6 15066319 A-G Hetero UTR_5_PRIME
SBS Chr6 20064656 A-G Hetero INTERGENIC
SBS Chr7 388267 G-A Hetero INTERGENIC
SBS Chr7 10464873 C-T Hetero INTERGENIC
SBS Chr7 16114301 T-A Hetero INTERGENIC
SBS Chr8 617741 A-T Hetero INTERGENIC
SBS Chr8 6496435 A-T Hetero INTERGENIC
SBS Chr8 8542233 A-G Hetero INTERGENIC
SBS Chr8 12075562 C-T Hetero INTERGENIC
SBS Chr8 20195564 T-C Hetero INTRON
SBS Chr8 25297285 C-A Hetero INTERGENIC
SBS Chr8 26762398 A-T Hetero INTERGENIC
SBS Chr10 4685053 T-A Hetero INTERGENIC
SBS Chr10 11086122 G-A Hetero INTERGENIC
SBS Chr10 15327204 G-A Homo NON_SYNONYMOUS_CODING OsKitaake10g097900
SBS Chr10 16416205 G-T Homo INTERGENIC
SBS Chr10 21375575 G-A Hetero INTERGENIC
SBS Chr11 15998256 G-A Hetero SYNONYMOUS_CODING
SBS Chr11 22967883 G-T Hetero INTERGENIC
SBS Chr12 7443384 A-C Homo INTRON

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 941378 941379 1
Deletion Chr4 2545798 2545805 7
Deletion Chr5 3533490 3533491 1
Deletion Chr1 3763065 3763070 5
Deletion Chr5 5783001 5796000 12999 OsKitaake05g062000
Deletion Chr11 8322420 8322421 1
Deletion Chr10 13652596 13652607 11
Deletion Chr2 14418710 14418729 19
Deletion Chr7 14808119 14808121 2
Deletion Chr7 14986981 14986989 8
Deletion Chr2 15548757 15548764 7
Deletion Chr7 16258961 16258968 7
Deletion Chr5 22159829 22159832 3
Deletion Chr12 23836220 23836232 12
Deletion Chr8 27278612 27278613 1 OsKitaake08g224300
Deletion Chr5 27812461 27812464 3 OsKitaake05g254900
Deletion Chr7 29053961 29053966 5
Deletion Chr3 29551996 29552021 25
Deletion Chr1 43358223 43358235 12

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 6627182 6627184 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 28302616 29240707 OsKitaake04g210800

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 5240537 Chr2 18995426
Translocation Chr8 5240542 Chr2 18992174 OsKitaake02g185900
Translocation Chr6 8926817 Chr3 16828719
Translocation Chr3 16828723 Chr1 28463949

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10554934	A-C	Hetero	INTERGENIC
SBS	Chr1	20235519	G-A	Hetero	INTERGENIC
SBS	Chr1	27656164	G-T	Hetero	INTERGENIC
SBS	Chr2	15018348	G-A	Homo	INTERGENIC
SBS	Chr2	15557993	A-G	Homo	INTERGENIC
SBS	Chr2	21130470	G-A	Homo	INTERGENIC
SBS	Chr2	24513244	G-T	Hetero	INTERGENIC
SBS	Chr2	29261285	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g294200
SBS	Chr2	31397645	C-T	Hetero	INTERGENIC
SBS	Chr2	31652419	G-A	Homo	INTERGENIC
SBS	Chr3	8528907	A-T	Hetero	INTERGENIC
SBS	Chr3	24169765	G-A	Hetero	INTERGENIC
SBS	Chr3	32673495	A-G	Hetero	UTR_3_PRIME
SBS	Chr3	33194966	G-T	Hetero	INTERGENIC
SBS	Chr3	35391244	G-T	Hetero	INTERGENIC
SBS	Chr4	10809815	C-G	Hetero	INTERGENIC
SBS	Chr4	18513715	G-A	Hetero	INTERGENIC
SBS	Chr4	20053121	A-G	Hetero	INTRON
SBS	Chr4	23208564	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g141700
SBS	Chr4	29162105	G-T	Hetero	INTERGENIC
SBS	Chr4	29162106	G-T	Hetero	INTERGENIC
SBS	Chr5	4739472	C-T	Hetero	INTERGENIC
SBS	Chr5	5719799	C-A	Hetero	INTERGENIC
SBS	Chr5	22684149	G-A	Homo	INTERGENIC
SBS	Chr5	22805905	C-A	Hetero	INTERGENIC
SBS	Chr6	2690984	G-A	Homo	INTERGENIC
SBS	Chr6	8968775	G-A	Hetero	INTRON
SBS	Chr6	13649942	G-T	Hetero	INTERGENIC
SBS	Chr6	15066319	A-G	Hetero	UTR_5_PRIME
SBS	Chr6	20064656	A-G	Hetero	INTERGENIC
SBS	Chr7	388267	G-A	Hetero	INTERGENIC
SBS	Chr7	10464873	C-T	Hetero	INTERGENIC
SBS	Chr7	16114301	T-A	Hetero	INTERGENIC
SBS	Chr8	617741	A-T	Hetero	INTERGENIC
SBS	Chr8	6496435	A-T	Hetero	INTERGENIC
SBS	Chr8	8542233	A-G	Hetero	INTERGENIC
SBS	Chr8	12075562	C-T	Hetero	INTERGENIC
SBS	Chr8	20195564	T-C	Hetero	INTRON
SBS	Chr8	25297285	C-A	Hetero	INTERGENIC
SBS	Chr8	26762398	A-T	Hetero	INTERGENIC
SBS	Chr10	4685053	T-A	Hetero	INTERGENIC
SBS	Chr10	11086122	G-A	Hetero	INTERGENIC
SBS	Chr10	15327204	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g097900
SBS	Chr10	16416205	G-T	Homo	INTERGENIC
SBS	Chr10	21375575	G-A	Hetero	INTERGENIC
SBS	Chr11	15998256	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr11	22967883	G-T	Hetero	INTERGENIC
SBS	Chr12	7443384	A-C	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	941378	941379	1
Deletion	Chr4	2545798	2545805	7
Deletion	Chr5	3533490	3533491	1
Deletion	Chr1	3763065	3763070	5
Deletion	Chr5	5783001	5796000	12999	OsKitaake05g062000
Deletion	Chr11	8322420	8322421	1
Deletion	Chr10	13652596	13652607	11
Deletion	Chr2	14418710	14418729	19
Deletion	Chr7	14808119	14808121	2
Deletion	Chr7	14986981	14986989	8
Deletion	Chr2	15548757	15548764	7
Deletion	Chr7	16258961	16258968	7
Deletion	Chr5	22159829	22159832	3
Deletion	Chr12	23836220	23836232	12
Deletion	Chr8	27278612	27278613	1	OsKitaake08g224300
Deletion	Chr5	27812461	27812464	3	OsKitaake05g254900
Deletion	Chr7	29053961	29053966	5
Deletion	Chr3	29551996	29552021	25
Deletion	Chr1	43358223	43358235	12

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	28302616	29240707	OsKitaake04g210800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes