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| Mutant Information |
|---|
| Mutant Name | FN2882-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2882-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 34
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 12695932 | G-A | Homo | INTRON | |
| SBS | Chr1 | 13276298 | A-C | Homo | INTERGENIC | |
| SBS | Chr1 | 21966438 | C-G | Homo | INTRON | |
| SBS | Chr1 | 39213602 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 27575929 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 33247666 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g342100 |
| SBS | Chr2 | 34524874 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 30353823 | G-T | Hetero | INTRON | |
| SBS | Chr4 | 1415928 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 1426749 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 1867030 | C-T | Hetero | START_GAINED | |
| SBS | Chr4 | 1867032 | T-G | Hetero | UTR_5_PRIME | |
| SBS | Chr4 | 1867034 | G-A | Hetero | UTR_5_PRIME | |
| SBS | Chr4 | 32871941 | T-A | Hetero | UTR_5_PRIME | |
| SBS | Chr5 | 4863232 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 15398121 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 23218909 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr6 | 7962025 | G-C | Homo | INTERGENIC | |
| SBS | Chr6 | 28012337 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 16312975 | C-A | Homo | INTERGENIC | |
| SBS | Chr8 | 24824330 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 26762158 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 9096678 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 13029853 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 21370855 | C-A | Homo | INTERGENIC | |
| SBS | Chr10 | 282775 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 5175118 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 6606509 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 15643230 | C-A | Homo | INTERGENIC | |
| SBS | Chr10 | 18021757 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 25460228 | A-G | Homo | INTERGENIC | |
| SBS | Chr12 | 7388734 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 8356468 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g086500 |
| SBS | Chr12 | 25611361 | G-A | Hetero | INTERGENIC |
Deletions: 20
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 87447 | 87448 | 1 | |
| Deletion | Chr9 | 8219621 | 8219628 | 7 | |
| Deletion | Chr2 | 8677994 | 8677997 | 3 | OsKitaake02g110400 |
| Deletion | Chr1 | 9270912 | 9270913 | 1 | |
| Deletion | Chr12 | 12279030 | 12279031 | 1 | |
| Deletion | Chr3 | 13763082 | 13763090 | 8 | |
| Deletion | Chr1 | 16702205 | 16702208 | 3 | |
| Deletion | Chr8 | 17032001 | 17325000 | 292999 | 21 |
| Deletion | Chr10 | 17885061 | 17885070 | 9 | |
| Deletion | Chr9 | 18229084 | 18229085 | 1 | OsKitaake09g141100 |
| Deletion | Chr5 | 18460716 | 18460728 | 12 | |
| Deletion | Chr12 | 18532464 | 18532489 | 25 | |
| Deletion | Chr12 | 18533267 | 18533269 | 2 | |
| Deletion | Chr1 | 18604945 | 18604968 | 23 | |
| Deletion | Chr4 | 18607403 | 18607406 | 3 | |
| Deletion | Chr2 | 19237456 | 19237457 | 1 | |
| Deletion | Chr12 | 21131728 | 21131735 | 7 | OsKitaake12g165800 |
| Deletion | Chr2 | 27912001 | 28093000 | 180999 | 18 |
| Deletion | Chr6 | 28616806 | 28616807 | 1 | |
| Deletion | Chr4 | 32646783 | 32646785 | 2 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr8 | 28456327 | 28456330 | 2 | |
| Insertion | Chr12 | 24918265 | 24918268 | 2 |
Inversions: 5
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 17037227 | 17269403 | |
| Inversion | Chr6 | 27461169 | 27701199 | 2 |
| Inversion | Chr6 | 27461170 | 27701199 | 2 |
| Inversion | Chr3 | 28959860 | 28962042 | OsKitaake03g301000 |
| Inversion | Chr3 | 28959869 | 28971680 | OsKitaake03g301000 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 9114034 | Chr2 | 28073185 | OsKitaake02g283000 |
| Translocation | Chr10 | 9443927 | Chr2 | 34610582 | 2 |
| Translocation | Chr10 | 9444775 | Chr2 | 34610580 | 2 |
| Translocation | Chr11 | 17445249 | Chr8 | 17032031 |