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| Mutant Information |
|---|
| Mutant Name | FN2883-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2883-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 47
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 14720495 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 22605079 | A-G | Homo | INTERGENIC | |
| SBS | Chr1 | 39387272 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 2778549 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g039600 |
| SBS | Chr2 | 8321491 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 9452654 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 12295730 | C-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 18180425 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 20448485 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 26437758 | A-T | Homo | INTRON | |
| SBS | Chr2 | 27724101 | C-T | Hetero | INTRON | |
| SBS | Chr2 | 31033518 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 4837779 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 11610158 | A-T | Homo | INTERGENIC | |
| SBS | Chr3 | 26250489 | A-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 35443930 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 1205357 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 14369090 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 14908611 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 18179543 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 28726237 | G-T | Homo | INTERGENIC | |
| SBS | Chr5 | 2219375 | A-G | Homo | UTR_3_PRIME | |
| SBS | Chr5 | 9822576 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 20726632 | C-A | Homo | INTERGENIC | |
| SBS | Chr5 | 20916175 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 113387 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 20117801 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g180300 |
| SBS | Chr6 | 30046308 | G-T | Homo | INTERGENIC | |
| SBS | Chr6 | 30046309 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 8581098 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 26941381 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake08g218800 |
| SBS | Chr8 | 28682250 | A-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 5218174 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 3809295 | A-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 3809297 | A-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 6835227 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 15733579 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 17180129 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 4460680 | A-C | Homo | INTERGENIC | |
| SBS | Chr11 | 12086444 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 13003924 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 14291272 | T-C | Hetero | INTRON | |
| SBS | Chr11 | 21095637 | T-A | Homo | INTERGENIC | |
| SBS | Chr12 | 9369355 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 9441329 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 11115886 | A-G | Homo | INTERGENIC | |
| SBS | Chr12 | 13104689 | C-T | Homo | INTERGENIC |
Deletions: 17
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 4666506 | 4666507 | 1 | |
| Deletion | Chr11 | 5630738 | 5630747 | 9 | OsKitaake11g069000 |
| Deletion | Chr6 | 6132110 | 6132112 | 2 | |
| Deletion | Chr10 | 6811275 | 6811283 | 8 | |
| Deletion | Chr7 | 7764191 | 7764194 | 3 | |
| Deletion | Chr1 | 7932275 | 7932291 | 16 | |
| Deletion | Chr10 | 10781762 | 10781763 | 1 | OsKitaake10g063800 |
| Deletion | Chr6 | 12212721 | 12212722 | 1 | |
| Deletion | Chr6 | 13168789 | 13168801 | 12 | |
| Deletion | Chr2 | 17360312 | 17360321 | 9 | |
| Deletion | Chr2 | 18402626 | 18402628 | 2 | |
| Deletion | Chr9 | 19128561 | 19128564 | 3 | OsKitaake09g153500 |
| Deletion | Chr10 | 20075495 | 20075496 | 1 | OsKitaake10g151800 |
| Deletion | Chr2 | 24717001 | 24717002 | 1 | |
| Deletion | Chr3 | 33197979 | 33197980 | 1 | |
| Deletion | Chr3 | 33786418 | 33786422 | 4 | |
| Deletion | Chr1 | 42008885 | 42008886 | 1 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 17029051 | 17029055 | 3 | |
| Insertion | Chr6 | 7628625 | 7628628 | 2 | |
| Insertion | Chr9 | 12416914 | 12416921 | 6 | |
| Insertion | Chr11 | 4030508 | 4030511 | 2 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 19415222 | 19670678 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 19415202 | Chr1 | 32179254 | |
| Translocation | Chr10 | 19670669 | Chr1 | 32180906 | OsKitaake01g325200 |
| Translocation | Chr11 | 23097959 | Chr10 | 9701219 | OsKitaake11g183300 |
| Translocation | Chr11 | 23097964 | Chr10 | 9700645 | OsKitaake11g183300 |