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Mutant Information

Mutant Name	FN2885-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2885-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7113217 A-C Hetero INTERGENIC
SBS Chr1 13228878 C-T Hetero INTERGENIC
SBS Chr1 16881851 G-T Hetero INTERGENIC
SBS Chr2 2458573 G-T Homo INTERGENIC
SBS Chr2 6073675 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g082900
SBS Chr2 6073678 G-A Hetero SYNONYMOUS_CODING
SBS Chr2 20484227 G-A Hetero INTERGENIC
SBS Chr2 24015350 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g236000
SBS Chr3 1555060 G-A Hetero INTRON
SBS Chr3 5353518 A-C Hetero UTR_3_PRIME
SBS Chr3 12672932 T-A Homo INTRON
SBS Chr3 13606413 G-A Hetero INTERGENIC
SBS Chr3 32714642 G-C Hetero INTERGENIC
SBS Chr4 1217309 T-G Hetero INTRON
SBS Chr4 31033766 G-T Hetero INTERGENIC
SBS Chr5 7889388 T-G Homo INTERGENIC
SBS Chr5 8598757 G-T Hetero INTERGENIC
SBS Chr5 21665556 T-C Homo INTERGENIC
SBS Chr6 7135752 C-T Hetero INTERGENIC
SBS Chr6 14601798 G-A Hetero INTERGENIC
SBS Chr6 18922237 C-T Hetero INTERGENIC
SBS Chr7 527011 G-A Homo INTERGENIC
SBS Chr7 4932399 T-A Homo INTRON
SBS Chr7 10341514 A-G Hetero INTERGENIC
SBS Chr7 11877313 A-G Hetero INTERGENIC
SBS Chr8 22448186 G-A Hetero INTERGENIC
SBS Chr8 25271376 C-A Homo INTERGENIC
SBS Chr8 25438469 C-T Homo INTRON
SBS Chr8 26464959 G-A Hetero INTERGENIC
SBS Chr9 1374113 A-G Hetero INTERGENIC
SBS Chr9 19975691 A-T Hetero INTERGENIC
SBS Chr9 20525818 G-A Hetero INTERGENIC
SBS Chr10 15058027 A-G Hetero INTERGENIC
SBS Chr11 4890942 G-A Hetero INTERGENIC
SBS Chr11 5244711 G-A Hetero INTRON
SBS Chr11 5802356 G-A Hetero INTERGENIC
SBS Chr11 15939031 G-A Homo UTR_3_PRIME
SBS Chr11 21971496 C-T Homo INTERGENIC
SBS Chr11 22671478 G-A Homo INTERGENIC
SBS Chr12 9304534 C-A Hetero INTERGENIC
SBS Chr12 21130635 G-A Hetero INTRON

Deletions: 31

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 159791 159798 7
Deletion Chr7 180955 180969 14
Deletion Chr2 2458122 2458130 8
Deletion Chr5 2461818 2461823 5
Deletion Chr2 3987371 3987373 2
Deletion Chr2 4070173 4070174 1 OsKitaake02g057400
Deletion Chr10 6218064 6218070 6
Deletion Chr5 7984333 7984339 6
Deletion Chr11 10320604 10320617 13
Deletion Chr3 10907473 10907474 1
Deletion Chr6 11253818 11253825 7 OsKitaake06g124400
Deletion Chr4 13457571 13457573 2
Deletion Chr1 13615614 13615617 3
Deletion Chr12 15555654 15555662 8
Deletion Chr1 15914862 15914864 2
Deletion Chr5 16731936 16731940 4 OsKitaake05g128200
Deletion Chr11 20421713 20421730 17
Deletion Chr11 25548790 25548803 13
Deletion Chr6 27171615 27171622 7
Deletion Chr4 27233729 27233733 4
Deletion Chr1 28450989 28450997 8
Deletion Chr2 28790266 28790273 7 OsKitaake02g290000
Deletion Chr3 29779032 29779034 2
Deletion Chr4 29889083 29889090 7
Deletion Chr4 33807078 33807082 4
Deletion Chr3 34460236 34460240 4
Deletion Chr1 35316631 35316643 12 OsKitaake01g372500
Deletion Chr4 35346527 35346537 10
Deletion Chr1 36788529 36788536 7 OsKitaake01g391200
Deletion Chr1 37957683 37957684 1
Deletion Chr1 43100316 43100341 25

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 946114 946116 1
Insertion Chr4 33000060 33000063 2
Insertion Chr7 985682 985685 2
Insertion Chr8 104032 104037 4
Insertion Chr10 7751577 7751580 2
Insertion Chr5 29287059 29287062 2

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 2115982 Chr1 42938288 OsKitaake01g473100
Translocation Chr12 2115985 Chr11 25820638
Translocation Chr12 14909244 Chr2 10565064
Translocation Chr11 25820207 Chr2 16875240
Translocation Chr11 25820632 Chr2 16875234

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7113217	A-C	Hetero	INTERGENIC
SBS	Chr1	13228878	C-T	Hetero	INTERGENIC
SBS	Chr1	16881851	G-T	Hetero	INTERGENIC
SBS	Chr2	2458573	G-T	Homo	INTERGENIC
SBS	Chr2	6073675	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g082900
SBS	Chr2	6073678	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	20484227	G-A	Hetero	INTERGENIC
SBS	Chr2	24015350	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g236000
SBS	Chr3	1555060	G-A	Hetero	INTRON
SBS	Chr3	5353518	A-C	Hetero	UTR_3_PRIME
SBS	Chr3	12672932	T-A	Homo	INTRON
SBS	Chr3	13606413	G-A	Hetero	INTERGENIC
SBS	Chr3	32714642	G-C	Hetero	INTERGENIC
SBS	Chr4	1217309	T-G	Hetero	INTRON
SBS	Chr4	31033766	G-T	Hetero	INTERGENIC
SBS	Chr5	7889388	T-G	Homo	INTERGENIC
SBS	Chr5	8598757	G-T	Hetero	INTERGENIC
SBS	Chr5	21665556	T-C	Homo	INTERGENIC
SBS	Chr6	7135752	C-T	Hetero	INTERGENIC
SBS	Chr6	14601798	G-A	Hetero	INTERGENIC
SBS	Chr6	18922237	C-T	Hetero	INTERGENIC
SBS	Chr7	527011	G-A	Homo	INTERGENIC
SBS	Chr7	4932399	T-A	Homo	INTRON
SBS	Chr7	10341514	A-G	Hetero	INTERGENIC
SBS	Chr7	11877313	A-G	Hetero	INTERGENIC
SBS	Chr8	22448186	G-A	Hetero	INTERGENIC
SBS	Chr8	25271376	C-A	Homo	INTERGENIC
SBS	Chr8	25438469	C-T	Homo	INTRON
SBS	Chr8	26464959	G-A	Hetero	INTERGENIC
SBS	Chr9	1374113	A-G	Hetero	INTERGENIC
SBS	Chr9	19975691	A-T	Hetero	INTERGENIC
SBS	Chr9	20525818	G-A	Hetero	INTERGENIC
SBS	Chr10	15058027	A-G	Hetero	INTERGENIC
SBS	Chr11	4890942	G-A	Hetero	INTERGENIC
SBS	Chr11	5244711	G-A	Hetero	INTRON
SBS	Chr11	5802356	G-A	Hetero	INTERGENIC
SBS	Chr11	15939031	G-A	Homo	UTR_3_PRIME
SBS	Chr11	21971496	C-T	Homo	INTERGENIC
SBS	Chr11	22671478	G-A	Homo	INTERGENIC
SBS	Chr12	9304534	C-A	Hetero	INTERGENIC
SBS	Chr12	21130635	G-A	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	159791	159798	7
Deletion	Chr7	180955	180969	14
Deletion	Chr2	2458122	2458130	8
Deletion	Chr5	2461818	2461823	5
Deletion	Chr2	3987371	3987373	2
Deletion	Chr2	4070173	4070174	1	OsKitaake02g057400
Deletion	Chr10	6218064	6218070	6
Deletion	Chr5	7984333	7984339	6
Deletion	Chr11	10320604	10320617	13
Deletion	Chr3	10907473	10907474	1
Deletion	Chr6	11253818	11253825	7	OsKitaake06g124400
Deletion	Chr4	13457571	13457573	2
Deletion	Chr1	13615614	13615617	3
Deletion	Chr12	15555654	15555662	8
Deletion	Chr1	15914862	15914864	2
Deletion	Chr5	16731936	16731940	4	OsKitaake05g128200
Deletion	Chr11	20421713	20421730	17
Deletion	Chr11	25548790	25548803	13
Deletion	Chr6	27171615	27171622	7
Deletion	Chr4	27233729	27233733	4
Deletion	Chr1	28450989	28450997	8
Deletion	Chr2	28790266	28790273	7	OsKitaake02g290000
Deletion	Chr3	29779032	29779034	2
Deletion	Chr4	29889083	29889090	7
Deletion	Chr4	33807078	33807082	4
Deletion	Chr3	34460236	34460240	4
Deletion	Chr1	35316631	35316643	12	OsKitaake01g372500
Deletion	Chr4	35346527	35346537	10
Deletion	Chr1	36788529	36788536	7	OsKitaake01g391200
Deletion	Chr1	37957683	37957684	1
Deletion	Chr1	43100316	43100341	25

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	2115982	Chr1	42938288	OsKitaake01g473100
Translocation	Chr12	2115985	Chr11	25820638
Translocation	Chr12	14909244	Chr2	10565064
Translocation	Chr11	25820207	Chr2	16875240
Translocation	Chr11	25820632	Chr2	16875234

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes