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Mutant Information

Mutant Name	FN2886-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2886-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7452599 C-A Hetero SYNONYMOUS_CODING
SBS Chr1 18116774 T-C Hetero INTERGENIC
SBS Chr1 27090645 T-A Hetero UTR_3_PRIME
SBS Chr1 34910253 G-A Homo INTERGENIC
SBS Chr1 34910254 T-A Homo INTERGENIC
SBS Chr1 36262815 A-T Homo INTRON
SBS Chr1 42418759 T-A Hetero INTERGENIC
SBS Chr2 4476372 C-T Homo INTERGENIC
SBS Chr2 7942726 A-T Hetero INTERGENIC
SBS Chr2 24412626 C-T Hetero INTERGENIC
SBS Chr2 27736887 C-A Hetero INTERGENIC
SBS Chr3 16992936 T-G Hetero INTRON
SBS Chr3 20320472 A-T Hetero INTERGENIC
SBS Chr3 20320473 C-T Hetero INTERGENIC
SBS Chr3 31579528 A-G Homo INTERGENIC
SBS Chr4 9659636 G-C Homo INTERGENIC
SBS Chr4 24802819 C-T Hetero INTERGENIC
SBS Chr4 34511910 C-T Hetero INTERGENIC
SBS Chr5 8984728 G-A Hetero INTERGENIC
SBS Chr5 9719074 G-C Hetero INTERGENIC
SBS Chr5 10216356 A-T Hetero INTERGENIC
SBS Chr5 11861251 C-G Hetero INTERGENIC
SBS Chr5 14912764 C-T Hetero INTERGENIC
SBS Chr5 26139719 G-A Hetero INTRON
SBS Chr7 6213571 G-C Hetero INTERGENIC
SBS Chr7 8907674 T-C Hetero SYNONYMOUS_CODING
SBS Chr8 18558134 A-C Hetero INTERGENIC
SBS Chr9 5578568 T-A Hetero INTERGENIC
SBS Chr9 6451009 G-A Homo INTERGENIC
SBS Chr9 15735498 T-A Homo INTRON
SBS Chr10 2039246 G-A Hetero INTERGENIC
SBS Chr10 20320288 C-T Homo NON_SYNONYMOUS_CODING OsKitaake10g154700
SBS Chr11 1427224 G-T Homo INTERGENIC
SBS Chr11 21212087 G-A Hetero INTERGENIC
SBS Chr12 10746294 C-T Hetero INTERGENIC
SBS Chr12 25919118 C-T Homo NON_SYNONYMOUS_CODING OsKitaake12g214200

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1084641 1084646 5
Deletion Chr12 2926205 2926227 22 OsKitaake12g043500
Deletion Chr5 5939145 5939164 19
Deletion Chr10 6224244 6224254 10
Deletion Chr9 7485562 7485571 9
Deletion Chr4 8892670 8892671 1
Deletion Chr7 9074766 9074770 4
Deletion Chr12 10383406 10383408 2
Deletion Chr9 10599001 10623000 23999 2
Deletion Chr12 11275032 11275037 5
Deletion Chr7 11664869 11664871 2
Deletion Chr6 15932809 15932813 4
Deletion Chr2 16197386 16197394 8
Deletion Chr1 16845541 16845550 9
Deletion Chr9 20885731 20885732 1
Deletion Chr8 21379432 21379433 1
Deletion Chr2 25754284 25754303 19
Deletion Chr8 28447259 28447262 3
Deletion Chr2 29275530 29275531 1 OsKitaake02g294400
Deletion Chr5 29310001 29320000 9999 OsKitaake05g278300
Deletion Chr3 32286408 32286432 24 OsKitaake03g342600
Deletion Chr2 33477638 33477641 3

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 21400340 21400343 2
Insertion Chr3 23427951 23427954 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 26072699 26831549 OsKitaake12g223700
Inversion Chr12 26072703 26831551 OsKitaake12g223700

Translocations: 8

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 5518525 Chr1 24736675
Translocation Chr7 5520558 Chr1 24736674
Translocation Chr4 14573098 Chr3 19307470
Translocation Chr5 17323486 Chr3 19306041
Translocation Chr5 17323495 Chr3 19306948
Translocation Chr10 22537476 Chr5 29310317 OsKitaake05g278300
Translocation Chr6 29449899 Chr1 39369572 OsKitaake06g272800
Translocation Chr6 29449900 Chr1 39379719 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7452599	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	18116774	T-C	Hetero	INTERGENIC
SBS	Chr1	27090645	T-A	Hetero	UTR_3_PRIME
SBS	Chr1	34910253	G-A	Homo	INTERGENIC
SBS	Chr1	34910254	T-A	Homo	INTERGENIC
SBS	Chr1	36262815	A-T	Homo	INTRON
SBS	Chr1	42418759	T-A	Hetero	INTERGENIC
SBS	Chr2	4476372	C-T	Homo	INTERGENIC
SBS	Chr2	7942726	A-T	Hetero	INTERGENIC
SBS	Chr2	24412626	C-T	Hetero	INTERGENIC
SBS	Chr2	27736887	C-A	Hetero	INTERGENIC
SBS	Chr3	16992936	T-G	Hetero	INTRON
SBS	Chr3	20320472	A-T	Hetero	INTERGENIC
SBS	Chr3	20320473	C-T	Hetero	INTERGENIC
SBS	Chr3	31579528	A-G	Homo	INTERGENIC
SBS	Chr4	9659636	G-C	Homo	INTERGENIC
SBS	Chr4	24802819	C-T	Hetero	INTERGENIC
SBS	Chr4	34511910	C-T	Hetero	INTERGENIC
SBS	Chr5	8984728	G-A	Hetero	INTERGENIC
SBS	Chr5	9719074	G-C	Hetero	INTERGENIC
SBS	Chr5	10216356	A-T	Hetero	INTERGENIC
SBS	Chr5	11861251	C-G	Hetero	INTERGENIC
SBS	Chr5	14912764	C-T	Hetero	INTERGENIC
SBS	Chr5	26139719	G-A	Hetero	INTRON
SBS	Chr7	6213571	G-C	Hetero	INTERGENIC
SBS	Chr7	8907674	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr8	18558134	A-C	Hetero	INTERGENIC
SBS	Chr9	5578568	T-A	Hetero	INTERGENIC
SBS	Chr9	6451009	G-A	Homo	INTERGENIC
SBS	Chr9	15735498	T-A	Homo	INTRON
SBS	Chr10	2039246	G-A	Hetero	INTERGENIC
SBS	Chr10	20320288	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g154700
SBS	Chr11	1427224	G-T	Homo	INTERGENIC
SBS	Chr11	21212087	G-A	Hetero	INTERGENIC
SBS	Chr12	10746294	C-T	Hetero	INTERGENIC
SBS	Chr12	25919118	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g214200

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1084641	1084646	5
Deletion	Chr12	2926205	2926227	22	OsKitaake12g043500
Deletion	Chr5	5939145	5939164	19
Deletion	Chr10	6224244	6224254	10
Deletion	Chr9	7485562	7485571	9
Deletion	Chr4	8892670	8892671	1
Deletion	Chr7	9074766	9074770	4
Deletion	Chr12	10383406	10383408	2
Deletion	Chr9	10599001	10623000	23999	2
Deletion	Chr12	11275032	11275037	5
Deletion	Chr7	11664869	11664871	2
Deletion	Chr6	15932809	15932813	4
Deletion	Chr2	16197386	16197394	8
Deletion	Chr1	16845541	16845550	9
Deletion	Chr9	20885731	20885732	1
Deletion	Chr8	21379432	21379433	1
Deletion	Chr2	25754284	25754303	19
Deletion	Chr8	28447259	28447262	3
Deletion	Chr2	29275530	29275531	1	OsKitaake02g294400
Deletion	Chr5	29310001	29320000	9999	OsKitaake05g278300
Deletion	Chr3	32286408	32286432	24	OsKitaake03g342600
Deletion	Chr2	33477638	33477641	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	26072699	26831549	OsKitaake12g223700
Inversion	Chr12	26072703	26831551	OsKitaake12g223700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes