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Mutant Information

Mutant Name	FN2887-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2887-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 28955910 C-T Hetero INTERGENIC
SBS Chr1 30655850 G-T Hetero INTERGENIC
SBS Chr1 41410829 G-A Hetero INTERGENIC
SBS Chr1 42948228 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g473400
SBS Chr1 42948235 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g473400
SBS Chr2 9597763 C-T Hetero INTERGENIC
SBS Chr2 19081499 C-T Hetero INTERGENIC
SBS Chr2 19696436 G-A Hetero INTERGENIC
SBS Chr2 21604709 G-A Hetero INTERGENIC
SBS Chr2 21604710 G-A Hetero INTERGENIC
SBS Chr2 21605346 A-G Hetero INTERGENIC
SBS Chr2 25260153 C-T Homo INTERGENIC
SBS Chr2 28237541 C-T Homo INTERGENIC
SBS Chr2 36970753 T-A Homo INTERGENIC
SBS Chr3 21063548 A-T Hetero INTERGENIC
SBS Chr3 21063549 C-T Hetero INTERGENIC
SBS Chr3 23804914 C-T Hetero INTRON
SBS Chr3 34554255 C-T Hetero INTERGENIC
SBS Chr4 13068274 G-C Hetero INTERGENIC
SBS Chr4 16365151 A-G Hetero INTERGENIC
SBS Chr4 18726089 T-C Hetero INTRON
SBS Chr4 35963081 A-T Hetero SYNONYMOUS_CODING
SBS Chr5 2861208 C-G Hetero INTERGENIC
SBS Chr5 3268005 A-C Hetero INTERGENIC
SBS Chr5 16923520 T-A Homo INTERGENIC
SBS Chr5 25231751 C-G Hetero INTERGENIC
SBS Chr5 30102952 G-A Hetero #VALUE!
SBS Chr7 6533843 T-G Hetero INTERGENIC
SBS Chr7 14526928 G-A Hetero INTERGENIC
SBS Chr8 10606160 A-G Hetero INTERGENIC
SBS Chr8 13165814 T-C Hetero INTERGENIC
SBS Chr8 27201665 C-T Homo INTRON
SBS Chr9 11717955 A-C Hetero INTERGENIC
SBS Chr9 14718841 A-T Hetero INTERGENIC
SBS Chr9 14779539 A-G Hetero INTERGENIC
SBS Chr9 22215947 A-T Hetero INTERGENIC
SBS Chr10 7414709 C-T Hetero INTERGENIC
SBS Chr11 11886891 C-T Homo INTERGENIC
SBS Chr11 15317918 T-A Homo INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 3450001 3479000 28999 6
Deletion Chr7 4525308 4525317 9
Deletion Chr4 7286001 7364000 77999 2
Deletion Chr1 7955894 7955895 1
Deletion Chr8 8445026 8445029 3
Deletion Chr12 9057067 9057069 2
Deletion Chr6 12172160 12172172 12
Deletion Chr9 22174535 22174538 3
Deletion Chr3 22274670 22274683 13
Deletion Chr9 22313678 22313691 13
Deletion Chr11 23762489 23762491 2
Deletion Chr4 25956682 25956690 8
Deletion Chr2 34164147 34164154 7
Deletion Chr4 35310542 35310545 3
Deletion Chr1 39745709 39745715 6

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 18897752 18897761 8
Insertion Chr10 11249451 11249455 3

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28955910	C-T	Hetero	INTERGENIC
SBS	Chr1	30655850	G-T	Hetero	INTERGENIC
SBS	Chr1	41410829	G-A	Hetero	INTERGENIC
SBS	Chr1	42948228	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g473400
SBS	Chr1	42948235	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g473400
SBS	Chr2	9597763	C-T	Hetero	INTERGENIC
SBS	Chr2	19081499	C-T	Hetero	INTERGENIC
SBS	Chr2	19696436	G-A	Hetero	INTERGENIC
SBS	Chr2	21604709	G-A	Hetero	INTERGENIC
SBS	Chr2	21604710	G-A	Hetero	INTERGENIC
SBS	Chr2	21605346	A-G	Hetero	INTERGENIC
SBS	Chr2	25260153	C-T	Homo	INTERGENIC
SBS	Chr2	28237541	C-T	Homo	INTERGENIC
SBS	Chr2	36970753	T-A	Homo	INTERGENIC
SBS	Chr3	21063548	A-T	Hetero	INTERGENIC
SBS	Chr3	21063549	C-T	Hetero	INTERGENIC
SBS	Chr3	23804914	C-T	Hetero	INTRON
SBS	Chr3	34554255	C-T	Hetero	INTERGENIC
SBS	Chr4	13068274	G-C	Hetero	INTERGENIC
SBS	Chr4	16365151	A-G	Hetero	INTERGENIC
SBS	Chr4	18726089	T-C	Hetero	INTRON
SBS	Chr4	35963081	A-T	Hetero	SYNONYMOUS_CODING
SBS	Chr5	2861208	C-G	Hetero	INTERGENIC
SBS	Chr5	3268005	A-C	Hetero	INTERGENIC
SBS	Chr5	16923520	T-A	Homo	INTERGENIC
SBS	Chr5	25231751	C-G	Hetero	INTERGENIC
SBS	Chr5	30102952	G-A	Hetero	#VALUE!
SBS	Chr7	6533843	T-G	Hetero	INTERGENIC
SBS	Chr7	14526928	G-A	Hetero	INTERGENIC
SBS	Chr8	10606160	A-G	Hetero	INTERGENIC
SBS	Chr8	13165814	T-C	Hetero	INTERGENIC
SBS	Chr8	27201665	C-T	Homo	INTRON
SBS	Chr9	11717955	A-C	Hetero	INTERGENIC
SBS	Chr9	14718841	A-T	Hetero	INTERGENIC
SBS	Chr9	14779539	A-G	Hetero	INTERGENIC
SBS	Chr9	22215947	A-T	Hetero	INTERGENIC
SBS	Chr10	7414709	C-T	Hetero	INTERGENIC
SBS	Chr11	11886891	C-T	Homo	INTERGENIC
SBS	Chr11	15317918	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	3450001	3479000	28999	6
Deletion	Chr7	4525308	4525317	9
Deletion	Chr4	7286001	7364000	77999	2
Deletion	Chr1	7955894	7955895	1
Deletion	Chr8	8445026	8445029	3
Deletion	Chr12	9057067	9057069	2
Deletion	Chr6	12172160	12172172	12
Deletion	Chr9	22174535	22174538	3
Deletion	Chr3	22274670	22274683	13
Deletion	Chr9	22313678	22313691	13
Deletion	Chr11	23762489	23762491	2
Deletion	Chr4	25956682	25956690	8
Deletion	Chr2	34164147	34164154	7
Deletion	Chr4	35310542	35310545	3
Deletion	Chr1	39745709	39745715	6

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes