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Mutant Information

Mutant Name	FN2888-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2888-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3963936 T-C Hetero INTERGENIC
SBS Chr1 16156498 G-A Hetero INTERGENIC
SBS Chr1 16156499 G-A Hetero INTERGENIC
SBS Chr1 20995692 G-A Hetero INTRON
SBS Chr1 20995693 G-A Hetero INTRON
SBS Chr1 21616904 C-A Hetero INTERGENIC
SBS Chr1 26467368 G-A Hetero INTERGENIC
SBS Chr1 35019448 G-A Hetero INTRON
SBS Chr2 6131811 C-T Homo INTERGENIC
SBS Chr2 6553081 C-T Homo INTERGENIC
SBS Chr2 17349314 C-G Homo NON_SYNONYMOUS_CODING OsKitaake02g174200
SBS Chr3 21503685 C-A Hetero INTERGENIC
SBS Chr3 23511412 C-A Hetero INTERGENIC
SBS Chr3 25542659 C-A Hetero INTERGENIC
SBS Chr3 30149993 G-A Hetero INTERGENIC
SBS Chr3 34425196 C-T Homo INTERGENIC
SBS Chr4 22141480 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g129500
SBS Chr4 28087754 A-G Homo INTERGENIC
SBS Chr4 34486803 G-A Hetero INTERGENIC
SBS Chr5 11591045 T-C Hetero INTERGENIC
SBS Chr6 22648626 C-T Hetero INTERGENIC
SBS Chr6 27308078 A-G Homo INTERGENIC
SBS Chr6 28176989 A-C Homo INTERGENIC
SBS Chr6 28610322 G-C Homo INTRON
SBS Chr6 28904439 C-T Homo INTERGENIC
SBS Chr7 2313372 G-A Hetero INTERGENIC
SBS Chr7 10529822 C-T Homo INTERGENIC
SBS Chr8 3835949 G-A Homo INTERGENIC
SBS Chr8 11382846 C-T Hetero INTERGENIC
SBS Chr8 25479170 T-A Hetero INTERGENIC
SBS Chr9 3507719 C-T Hetero STOP_GAINED OsKitaake09g018000
SBS Chr9 5075326 C-T Hetero INTERGENIC
SBS Chr11 2728525 T-C Hetero INTRON
SBS Chr11 7624368 G-T Homo INTERGENIC
SBS Chr11 8697759 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g093901
SBS Chr11 12436920 A-G Hetero INTERGENIC
SBS Chr12 10433076 G-A Hetero INTERGENIC
SBS Chr12 17296522 G-A Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 4443353 4443357 4
Deletion Chr7 4571001 4626000 54999 6
Deletion Chr7 4628001 4673000 44999 7
Deletion Chr8 4853080 4853082 2
Deletion Chr9 6921001 7017000 95999 9
Deletion Chr1 8610634 8610636 2
Deletion Chr2 9601603 9601605 2
Deletion Chr6 10482317 10482320 3
Deletion Chr6 11475056 11475060 4
Deletion Chr9 12209001 12358000 148999 13
Deletion Chr9 12361001 12456000 94999 5
Deletion Chr11 15326001 15394000 67999 OsKitaake11g124300
Deletion Chr8 18727001 18883000 155999 14
Deletion Chr6 29174049 29174050 1
Deletion Chr3 35782028 35782037 9
Deletion Chr1 43038001 43391000 352999 56

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 2534779 2534782 2
Insertion Chr1 28439711 28439714 2
Insertion Chr8 24269613 24269616 2
Insertion Chr10 452192 452195 2
Insertion Chr3 697741 697745 3
Insertion Chr3 22175582 22175605 22 OsKitaake03g241635

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 12453382 12491029

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3963936	T-C	Hetero	INTERGENIC
SBS	Chr1	16156498	G-A	Hetero	INTERGENIC
SBS	Chr1	16156499	G-A	Hetero	INTERGENIC
SBS	Chr1	20995692	G-A	Hetero	INTRON
SBS	Chr1	20995693	G-A	Hetero	INTRON
SBS	Chr1	21616904	C-A	Hetero	INTERGENIC
SBS	Chr1	26467368	G-A	Hetero	INTERGENIC
SBS	Chr1	35019448	G-A	Hetero	INTRON
SBS	Chr2	6131811	C-T	Homo	INTERGENIC
SBS	Chr2	6553081	C-T	Homo	INTERGENIC
SBS	Chr2	17349314	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g174200
SBS	Chr3	21503685	C-A	Hetero	INTERGENIC
SBS	Chr3	23511412	C-A	Hetero	INTERGENIC
SBS	Chr3	25542659	C-A	Hetero	INTERGENIC
SBS	Chr3	30149993	G-A	Hetero	INTERGENIC
SBS	Chr3	34425196	C-T	Homo	INTERGENIC
SBS	Chr4	22141480	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g129500
SBS	Chr4	28087754	A-G	Homo	INTERGENIC
SBS	Chr4	34486803	G-A	Hetero	INTERGENIC
SBS	Chr5	11591045	T-C	Hetero	INTERGENIC
SBS	Chr6	22648626	C-T	Hetero	INTERGENIC
SBS	Chr6	27308078	A-G	Homo	INTERGENIC
SBS	Chr6	28176989	A-C	Homo	INTERGENIC
SBS	Chr6	28610322	G-C	Homo	INTRON
SBS	Chr6	28904439	C-T	Homo	INTERGENIC
SBS	Chr7	2313372	G-A	Hetero	INTERGENIC
SBS	Chr7	10529822	C-T	Homo	INTERGENIC
SBS	Chr8	3835949	G-A	Homo	INTERGENIC
SBS	Chr8	11382846	C-T	Hetero	INTERGENIC
SBS	Chr8	25479170	T-A	Hetero	INTERGENIC
SBS	Chr9	3507719	C-T	Hetero	STOP_GAINED	OsKitaake09g018000
SBS	Chr9	5075326	C-T	Hetero	INTERGENIC
SBS	Chr11	2728525	T-C	Hetero	INTRON
SBS	Chr11	7624368	G-T	Homo	INTERGENIC
SBS	Chr11	8697759	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g093901
SBS	Chr11	12436920	A-G	Hetero	INTERGENIC
SBS	Chr12	10433076	G-A	Hetero	INTERGENIC
SBS	Chr12	17296522	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	4443353	4443357	4
Deletion	Chr7	4571001	4626000	54999	6
Deletion	Chr7	4628001	4673000	44999	7
Deletion	Chr8	4853080	4853082	2
Deletion	Chr9	6921001	7017000	95999	9
Deletion	Chr1	8610634	8610636	2
Deletion	Chr2	9601603	9601605	2
Deletion	Chr6	10482317	10482320	3
Deletion	Chr6	11475056	11475060	4
Deletion	Chr9	12209001	12358000	148999	13
Deletion	Chr9	12361001	12456000	94999	5
Deletion	Chr11	15326001	15394000	67999	OsKitaake11g124300
Deletion	Chr8	18727001	18883000	155999	14
Deletion	Chr6	29174049	29174050	1
Deletion	Chr3	35782028	35782037	9
Deletion	Chr1	43038001	43391000	352999	56

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	12453382	12491029

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes