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Mutant Information

Mutant Name	FN2889-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2889-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13933452 C-T Hetero INTERGENIC
SBS Chr1 15314505 A-T Hetero INTERGENIC
SBS Chr1 15563422 C-G Hetero INTERGENIC
SBS Chr1 19320794 C-T Hetero INTRON
SBS Chr1 26877474 T-C Homo INTERGENIC
SBS Chr1 35238557 A-G Homo INTERGENIC
SBS Chr2 4033708 T-A Hetero INTERGENIC
SBS Chr2 6287845 C-T Homo NON_SYNONYMOUS_CODING OsKitaake02g085000
SBS Chr2 6461663 C-A Hetero INTERGENIC
SBS Chr2 15544685 T-A Hetero INTERGENIC
SBS Chr3 1623984 G-A Hetero INTRON
SBS Chr3 26901354 C-T Hetero INTERGENIC
SBS Chr4 18656724 G-A Homo INTERGENIC
SBS Chr4 20126172 A-G Homo INTRON
SBS Chr4 25910567 G-T Hetero INTERGENIC
SBS Chr4 29056810 T-A Homo INTERGENIC
SBS Chr4 32455468 G-A Hetero INTERGENIC
SBS Chr4 32455469 G-A Hetero INTERGENIC
SBS Chr4 35717046 C-T Hetero INTERGENIC
SBS Chr5 892543 C-A Hetero INTERGENIC
SBS Chr5 19834234 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g157600
SBS Chr5 23687975 T-G Homo INTERGENIC
SBS Chr6 14666093 A-C Homo INTERGENIC
SBS Chr6 17615062 A-G Homo UTR_3_PRIME
SBS Chr7 7843074 G-A Hetero INTERGENIC
SBS Chr8 3342617 G-A Hetero INTERGENIC
SBS Chr8 5095496 G-A Homo SYNONYMOUS_CODING
SBS Chr8 17274750 G-A Hetero INTERGENIC
SBS Chr9 2553160 C-T Homo INTERGENIC
SBS Chr9 4697584 T-C Homo INTERGENIC
SBS Chr9 15451344 C-A Hetero INTRON
SBS Chr10 18869731 A-C Hetero INTERGENIC
SBS Chr10 18869735 G-A Hetero INTERGENIC
SBS Chr11 24220756 C-T Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 156979 156981 2
Deletion Chr3 624737 624739 2
Deletion Chr1 2220117 2220118 1
Deletion Chr9 3328782 3328786 4
Deletion Chr4 3463818 3463819 1
Deletion Chr9 5817351 5817355 4
Deletion Chr11 15130717 15130719 2
Deletion Chr7 16381069 16381159 90
Deletion Chr4 17529439 17529441 2
Deletion Chr7 24945135 24945139 4

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 31988289 31988292 2
Insertion Chr4 9142719 9142724 4
Insertion Chr12 24170313 24170316 2
Insertion Chr12 24350746 24350749 2
Insertion Chr4 23879400 23879403 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 32339477 32412999 OsKitaake04g257900

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 10773141 Chr6 13035873
Translocation Chr12 10773143 Chr6 13036335
Translocation Chr4 14394290 Chr1 26784385

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13933452	C-T	Hetero	INTERGENIC
SBS	Chr1	15314505	A-T	Hetero	INTERGENIC
SBS	Chr1	15563422	C-G	Hetero	INTERGENIC
SBS	Chr1	19320794	C-T	Hetero	INTRON
SBS	Chr1	26877474	T-C	Homo	INTERGENIC
SBS	Chr1	35238557	A-G	Homo	INTERGENIC
SBS	Chr2	4033708	T-A	Hetero	INTERGENIC
SBS	Chr2	6287845	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g085000
SBS	Chr2	6461663	C-A	Hetero	INTERGENIC
SBS	Chr2	15544685	T-A	Hetero	INTERGENIC
SBS	Chr3	1623984	G-A	Hetero	INTRON
SBS	Chr3	26901354	C-T	Hetero	INTERGENIC
SBS	Chr4	18656724	G-A	Homo	INTERGENIC
SBS	Chr4	20126172	A-G	Homo	INTRON
SBS	Chr4	25910567	G-T	Hetero	INTERGENIC
SBS	Chr4	29056810	T-A	Homo	INTERGENIC
SBS	Chr4	32455468	G-A	Hetero	INTERGENIC
SBS	Chr4	32455469	G-A	Hetero	INTERGENIC
SBS	Chr4	35717046	C-T	Hetero	INTERGENIC
SBS	Chr5	892543	C-A	Hetero	INTERGENIC
SBS	Chr5	19834234	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g157600
SBS	Chr5	23687975	T-G	Homo	INTERGENIC
SBS	Chr6	14666093	A-C	Homo	INTERGENIC
SBS	Chr6	17615062	A-G	Homo	UTR_3_PRIME
SBS	Chr7	7843074	G-A	Hetero	INTERGENIC
SBS	Chr8	3342617	G-A	Hetero	INTERGENIC
SBS	Chr8	5095496	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr8	17274750	G-A	Hetero	INTERGENIC
SBS	Chr9	2553160	C-T	Homo	INTERGENIC
SBS	Chr9	4697584	T-C	Homo	INTERGENIC
SBS	Chr9	15451344	C-A	Hetero	INTRON
SBS	Chr10	18869731	A-C	Hetero	INTERGENIC
SBS	Chr10	18869735	G-A	Hetero	INTERGENIC
SBS	Chr11	24220756	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	156979	156981	2
Deletion	Chr3	624737	624739	2
Deletion	Chr1	2220117	2220118	1
Deletion	Chr9	3328782	3328786	4
Deletion	Chr4	3463818	3463819	1
Deletion	Chr9	5817351	5817355	4
Deletion	Chr11	15130717	15130719	2
Deletion	Chr7	16381069	16381159	90
Deletion	Chr4	17529439	17529441	2
Deletion	Chr7	24945135	24945139	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	32339477	32412999	OsKitaake04g257900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes