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Mutant Information

Mutant Name	FN2890-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2890-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10603548 T-C Homo NON_SYNONYMOUS_CODING OsKitaake01g132000
SBS Chr1 36457715 G-C Homo INTRON
SBS Chr1 42381324 G-A Hetero INTERGENIC
SBS Chr2 233870 A-G Hetero UTR_5_PRIME
SBS Chr2 7150207 G-A Hetero INTERGENIC
SBS Chr2 19637007 A-G Hetero INTERGENIC
SBS Chr2 19768860 C-T Hetero INTERGENIC
SBS Chr2 31550656 G-A Homo INTERGENIC
SBS Chr3 4502011 G-A Hetero INTERGENIC
SBS Chr3 11183591 A-T Hetero INTERGENIC
SBS Chr3 13171562 G-A Hetero INTERGENIC
SBS Chr3 14717433 T-C Hetero INTERGENIC
SBS Chr3 21506336 G-A Hetero INTERGENIC
SBS Chr3 23536877 C-T Hetero INTERGENIC
SBS Chr3 29978907 G-A Homo INTRON
SBS Chr3 32149941 T-G Hetero INTRON
SBS Chr4 1462214 C-T Homo INTERGENIC
SBS Chr4 10237104 C-T Homo INTERGENIC
SBS Chr4 13026741 C-T Hetero INTERGENIC
SBS Chr4 14315534 T-C Hetero INTERGENIC
SBS Chr4 18213290 G-A Hetero INTERGENIC
SBS Chr4 23584671 T-C Homo INTERGENIC
SBS Chr4 24549603 G-T Hetero INTERGENIC
SBS Chr4 28776795 G-A Hetero INTERGENIC
SBS Chr5 11649813 G-A Hetero INTERGENIC
SBS Chr5 11719334 T-C Homo INTERGENIC
SBS Chr5 14806023 A-G Hetero INTRON
SBS Chr6 2136053 T-A Hetero UTR_3_PRIME
SBS Chr6 16885568 T-A Hetero INTERGENIC
SBS Chr6 22324880 G-C Hetero INTERGENIC
SBS Chr6 29149414 G-A Hetero SYNONYMOUS_CODING
SBS Chr7 11159321 G-A Homo INTERGENIC
SBS Chr7 28403903 A-T Hetero INTERGENIC
SBS Chr8 2577412 C-T Homo INTERGENIC
SBS Chr8 11409030 C-T Homo INTERGENIC
SBS Chr8 16243512 C-T Hetero INTERGENIC
SBS Chr9 7060859 T-C Homo INTERGENIC
SBS Chr10 12994859 C-G Homo INTERGENIC
SBS Chr11 1891824 C-T Hetero INTERGENIC
SBS Chr11 10953433 C-G Homo INTERGENIC
SBS Chr11 12344989 A-G Homo INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1140238 1140248 10
Deletion Chr5 4864278 4864283 5
Deletion Chr7 7468956 7468974 18
Deletion Chr3 7663001 7754000 90999 10
Deletion Chr5 10240331 10240341 10
Deletion Chr1 16076781 16076783 2
Deletion Chr10 21852238 21852247 9
Deletion Chr10 22362175 22362181 6 OsKitaake10g183500
Deletion Chr4 23515894 23515897 3 OsKitaake04g146700
Deletion Chr8 24949368 24949370 2
Deletion Chr1 33359907 33359908 1

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 25156263 25156266 2
Insertion Chr7 2849863 2849866 2
Insertion Chr7 22110915 22110918 2
Insertion Chr9 4796439 4796442 2
Insertion Chr10 11989703 11989708 4
Insertion Chr12 6356667 6356671 3
Insertion Chr3 19362193 19362195 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 3509423 4251664 2
Inversion Chr3 3509430 4251680 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10603548	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g132000
SBS	Chr1	36457715	G-C	Homo	INTRON
SBS	Chr1	42381324	G-A	Hetero	INTERGENIC
SBS	Chr2	233870	A-G	Hetero	UTR_5_PRIME
SBS	Chr2	7150207	G-A	Hetero	INTERGENIC
SBS	Chr2	19637007	A-G	Hetero	INTERGENIC
SBS	Chr2	19768860	C-T	Hetero	INTERGENIC
SBS	Chr2	31550656	G-A	Homo	INTERGENIC
SBS	Chr3	4502011	G-A	Hetero	INTERGENIC
SBS	Chr3	11183591	A-T	Hetero	INTERGENIC
SBS	Chr3	13171562	G-A	Hetero	INTERGENIC
SBS	Chr3	14717433	T-C	Hetero	INTERGENIC
SBS	Chr3	21506336	G-A	Hetero	INTERGENIC
SBS	Chr3	23536877	C-T	Hetero	INTERGENIC
SBS	Chr3	29978907	G-A	Homo	INTRON
SBS	Chr3	32149941	T-G	Hetero	INTRON
SBS	Chr4	1462214	C-T	Homo	INTERGENIC
SBS	Chr4	10237104	C-T	Homo	INTERGENIC
SBS	Chr4	13026741	C-T	Hetero	INTERGENIC
SBS	Chr4	14315534	T-C	Hetero	INTERGENIC
SBS	Chr4	18213290	G-A	Hetero	INTERGENIC
SBS	Chr4	23584671	T-C	Homo	INTERGENIC
SBS	Chr4	24549603	G-T	Hetero	INTERGENIC
SBS	Chr4	28776795	G-A	Hetero	INTERGENIC
SBS	Chr5	11649813	G-A	Hetero	INTERGENIC
SBS	Chr5	11719334	T-C	Homo	INTERGENIC
SBS	Chr5	14806023	A-G	Hetero	INTRON
SBS	Chr6	2136053	T-A	Hetero	UTR_3_PRIME
SBS	Chr6	16885568	T-A	Hetero	INTERGENIC
SBS	Chr6	22324880	G-C	Hetero	INTERGENIC
SBS	Chr6	29149414	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr7	11159321	G-A	Homo	INTERGENIC
SBS	Chr7	28403903	A-T	Hetero	INTERGENIC
SBS	Chr8	2577412	C-T	Homo	INTERGENIC
SBS	Chr8	11409030	C-T	Homo	INTERGENIC
SBS	Chr8	16243512	C-T	Hetero	INTERGENIC
SBS	Chr9	7060859	T-C	Homo	INTERGENIC
SBS	Chr10	12994859	C-G	Homo	INTERGENIC
SBS	Chr11	1891824	C-T	Hetero	INTERGENIC
SBS	Chr11	10953433	C-G	Homo	INTERGENIC
SBS	Chr11	12344989	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1140238	1140248	10
Deletion	Chr5	4864278	4864283	5
Deletion	Chr7	7468956	7468974	18
Deletion	Chr3	7663001	7754000	90999	10
Deletion	Chr5	10240331	10240341	10
Deletion	Chr1	16076781	16076783	2
Deletion	Chr10	21852238	21852247	9
Deletion	Chr10	22362175	22362181	6	OsKitaake10g183500
Deletion	Chr4	23515894	23515897	3	OsKitaake04g146700
Deletion	Chr8	24949368	24949370	2
Deletion	Chr1	33359907	33359908	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	3509423	4251664	2
Inversion	Chr3	3509430	4251680	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes