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Mutant Information

Mutant Name	FN2891-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2891-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5183483 A-G Hetero INTERGENIC
SBS Chr1 22854822 G-A Hetero INTERGENIC
SBS Chr1 29903033 G-A Hetero INTERGENIC
SBS Chr1 30013181 G-A Hetero INTERGENIC
SBS Chr2 4302721 C-T Hetero INTERGENIC
SBS Chr2 23778439 G-A Hetero INTERGENIC
SBS Chr2 33513741 A-T Hetero INTERGENIC
SBS Chr2 36043788 A-G Hetero INTERGENIC
SBS Chr3 20931804 C-T Homo INTERGENIC
SBS Chr4 1303952 C-G Homo INTERGENIC
SBS Chr4 7476448 T-C Homo INTERGENIC
SBS Chr4 8826572 G-C Homo INTERGENIC
SBS Chr4 14441375 T-C Homo INTERGENIC
SBS Chr4 20059638 A-C Hetero INTRON
SBS Chr5 7997107 G-A Homo INTERGENIC
SBS Chr5 13127508 C-A Hetero INTERGENIC
SBS Chr5 23653476 A-T Hetero INTERGENIC
SBS Chr5 29302706 G-A Homo NON_SYNONYMOUS_CODING OsKitaake05g278201
SBS Chr7 11125089 G-A Homo INTERGENIC
SBS Chr8 7095796 G-T Hetero INTERGENIC
SBS Chr8 7501330 C-G Hetero INTERGENIC
SBS Chr8 17273612 G-A Homo INTERGENIC
SBS Chr8 20238566 C-T Hetero INTERGENIC
SBS Chr9 1198133 A-G Homo INTRON
SBS Chr11 4466553 C-A Homo INTERGENIC
SBS Chr11 13421907 G-T Homo INTERGENIC
SBS Chr11 25287893 G-C Homo INTERGENIC
SBS Chr12 2140869 T-A Hetero INTERGENIC
SBS Chr12 3381558 C-A Hetero INTERGENIC
SBS Chr12 11774199 G-T Homo INTERGENIC
SBS Chr12 21282311 C-T Homo INTERGENIC

Deletions: 31

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 2547658 2547660 2
Deletion Chr7 2763171 2763173 2
Deletion Chr11 3624001 3632000 7999 3
Deletion Chr12 7935349 7935355 6
Deletion Chr4 8059087 8059095 8
Deletion Chr5 8219001 8237000 17999
Deletion Chr12 8627766 8627773 7
Deletion Chr9 8781001 8808000 26999
Deletion Chr7 9149999 9150004 5
Deletion Chr11 9826907 9826911 4
Deletion Chr9 10039879 10039882 3
Deletion Chr5 10703131 10703132 1
Deletion Chr4 11544001 11564000 19999
Deletion Chr5 12219001 12230000 10999
Deletion Chr12 12579815 12579818 3
Deletion Chr5 15149474 15149476 2
Deletion Chr4 15204001 15223000 18999 OsKitaake04g073100
Deletion Chr1 16633086 16633088 2
Deletion Chr1 17050001 17089000 38999
Deletion Chr1 17367359 17367369 10
Deletion Chr4 17411001 17423000 11999 3
Deletion Chr5 18712001 18738000 25999 OsKitaake05g146000
Deletion Chr8 19588105 19588106 1
Deletion Chr8 21276001 21287000 10999
Deletion Chr6 21843001 21866000 22999 OsKitaake06g192500
Deletion Chr9 22291001 22314000 22999 2
Deletion Chr2 22746506 22746513 7
Deletion Chr6 24238001 24261000 22999
Deletion Chr6 26170721 26170729 8
Deletion Chr2 28661001 28679000 17999 OsKitaake02g288500
Deletion Chr3 31275001 31297000 21999 OsKitaake03g329300

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr9 7718420 7718423 2
Insertion Chr10 13879761 13879764 2

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 19879808 20344993 OsKitaake09g171000
Inversion Chr12 21247100 21300730
Inversion Chr12 21247109 21300742
Inversion Chr11 23190611 23274558 OsKitaake11g184100
Inversion Chr2 29835343 30537405
Inversion Chr4 31983648 32069497 OsKitaake04g253800
Inversion Chr4 31983659 32069506 OsKitaake04g253800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5183483	A-G	Hetero	INTERGENIC
SBS	Chr1	22854822	G-A	Hetero	INTERGENIC
SBS	Chr1	29903033	G-A	Hetero	INTERGENIC
SBS	Chr1	30013181	G-A	Hetero	INTERGENIC
SBS	Chr2	4302721	C-T	Hetero	INTERGENIC
SBS	Chr2	23778439	G-A	Hetero	INTERGENIC
SBS	Chr2	33513741	A-T	Hetero	INTERGENIC
SBS	Chr2	36043788	A-G	Hetero	INTERGENIC
SBS	Chr3	20931804	C-T	Homo	INTERGENIC
SBS	Chr4	1303952	C-G	Homo	INTERGENIC
SBS	Chr4	7476448	T-C	Homo	INTERGENIC
SBS	Chr4	8826572	G-C	Homo	INTERGENIC
SBS	Chr4	14441375	T-C	Homo	INTERGENIC
SBS	Chr4	20059638	A-C	Hetero	INTRON
SBS	Chr5	7997107	G-A	Homo	INTERGENIC
SBS	Chr5	13127508	C-A	Hetero	INTERGENIC
SBS	Chr5	23653476	A-T	Hetero	INTERGENIC
SBS	Chr5	29302706	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g278201
SBS	Chr7	11125089	G-A	Homo	INTERGENIC
SBS	Chr8	7095796	G-T	Hetero	INTERGENIC
SBS	Chr8	7501330	C-G	Hetero	INTERGENIC
SBS	Chr8	17273612	G-A	Homo	INTERGENIC
SBS	Chr8	20238566	C-T	Hetero	INTERGENIC
SBS	Chr9	1198133	A-G	Homo	INTRON
SBS	Chr11	4466553	C-A	Homo	INTERGENIC
SBS	Chr11	13421907	G-T	Homo	INTERGENIC
SBS	Chr11	25287893	G-C	Homo	INTERGENIC
SBS	Chr12	2140869	T-A	Hetero	INTERGENIC
SBS	Chr12	3381558	C-A	Hetero	INTERGENIC
SBS	Chr12	11774199	G-T	Homo	INTERGENIC
SBS	Chr12	21282311	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	2547658	2547660	2
Deletion	Chr7	2763171	2763173	2
Deletion	Chr11	3624001	3632000	7999	3
Deletion	Chr12	7935349	7935355	6
Deletion	Chr4	8059087	8059095	8
Deletion	Chr5	8219001	8237000	17999
Deletion	Chr12	8627766	8627773	7
Deletion	Chr9	8781001	8808000	26999
Deletion	Chr7	9149999	9150004	5
Deletion	Chr11	9826907	9826911	4
Deletion	Chr9	10039879	10039882	3
Deletion	Chr5	10703131	10703132	1
Deletion	Chr4	11544001	11564000	19999
Deletion	Chr5	12219001	12230000	10999
Deletion	Chr12	12579815	12579818	3
Deletion	Chr5	15149474	15149476	2
Deletion	Chr4	15204001	15223000	18999	OsKitaake04g073100
Deletion	Chr1	16633086	16633088	2
Deletion	Chr1	17050001	17089000	38999
Deletion	Chr1	17367359	17367369	10
Deletion	Chr4	17411001	17423000	11999	3
Deletion	Chr5	18712001	18738000	25999	OsKitaake05g146000
Deletion	Chr8	19588105	19588106	1
Deletion	Chr8	21276001	21287000	10999
Deletion	Chr6	21843001	21866000	22999	OsKitaake06g192500
Deletion	Chr9	22291001	22314000	22999	2
Deletion	Chr2	22746506	22746513	7
Deletion	Chr6	24238001	24261000	22999
Deletion	Chr6	26170721	26170729	8
Deletion	Chr2	28661001	28679000	17999	OsKitaake02g288500
Deletion	Chr3	31275001	31297000	21999	OsKitaake03g329300

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	19879808	20344993	OsKitaake09g171000
Inversion	Chr12	21247100	21300730
Inversion	Chr12	21247109	21300742
Inversion	Chr11	23190611	23274558	OsKitaake11g184100
Inversion	Chr2	29835343	30537405
Inversion	Chr4	31983648	32069497	OsKitaake04g253800
Inversion	Chr4	31983659	32069506	OsKitaake04g253800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes