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| Mutant Information |
|---|
| Mutant Name | FN2892-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2892-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 7631128 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 34986869 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 5386597 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 19690772 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 7569826 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 19230779 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 20024650 | T-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 24362844 | C-G | Homo | INTERGENIC | |
| SBS | Chr5 | 24424143 | A-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake05g197700 |
| SBS | Chr5 | 29455051 | T-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake05g280000 |
| SBS | Chr5 | 30221073 | C-A | Homo | INTERGENIC | |
| SBS | Chr6 | 14384736 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 22531698 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 29111903 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 10466768 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 20121412 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 154359 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g002100 |
| SBS | Chr8 | 2029981 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 10748258 | A-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 1995048 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 7948556 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 23625691 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 8721703 | G-A | Hetero | INTRON | |
| SBS | Chr11 | 22071443 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 6555685 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 7749675 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 12624092 | A-C | Hetero | INTRON | |
| SBS | Chr12 | 14850501 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 23850427 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 25755129 | T-A | Homo | INTERGENIC |
Deletions: 19
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 167534 | 167536 | 2 | |
| Deletion | Chr5 | 2582593 | 2582596 | 3 | |
| Deletion | Chr3 | 3143398 | 3143577 | 179 | |
| Deletion | Chr6 | 3393512 | 3393513 | 1 | |
| Deletion | Chr5 | 6627713 | 6627716 | 3 | |
| Deletion | Chr10 | 9708544 | 9708623 | 79 | |
| Deletion | Chr6 | 9834298 | 9834302 | 4 | |
| Deletion | Chr11 | 11533972 | 11533982 | 10 | |
| Deletion | Chr5 | 12215334 | 12215336 | 2 | |
| Deletion | Chr9 | 14176326 | 14176327 | 1 | |
| Deletion | Chr12 | 14687604 | 14687607 | 3 | |
| Deletion | Chr4 | 16258152 | 16258157 | 5 | |
| Deletion | Chr12 | 18744569 | 18744571 | 2 | |
| Deletion | Chr4 | 21223230 | 21223235 | 5 | |
| Deletion | Chr7 | 21910071 | 21910084 | 13 | |
| Deletion | Chr8 | 24473740 | 24473746 | 6 | |
| Deletion | Chr8 | 27271825 | 27271826 | 1 | |
| Deletion | Chr4 | 27572238 | 27572252 | 14 | |
| Deletion | Chr5 | 29817462 | 29817478 | 16 | OsKitaake05g285300 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr7 | 26628836 | 26628839 | 2 | |
| Insertion | Chr10 | 22567317 | 22567320 | 2 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 7802539 | 8384772 | |
| Inversion | Chr3 | 35801485 | 36459663 | OsKitaake03g404900 |
| Inversion | Chr3 | 35801495 | 36459671 | OsKitaake03g404900 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 7802563 | Chr6 | 20846869 | OsKitaake06g186100 |
| Translocation | Chr7 | 8384782 | Chr6 | 20846291 | OsKitaake06g186100 |