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| Mutant Information |
|---|
| Mutant Name | FN2893-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2893-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 14895805 | T-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 28431565 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 33778648 | T-A | Homo | INTERGENIC | |
| SBS | Chr2 | 13559529 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 13251636 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g177100 |
| SBS | Chr3 | 18457250 | A-T | Homo | INTERGENIC | |
| SBS | Chr3 | 25432210 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 32717208 | C-T | Hetero | INTRON | |
| SBS | Chr3 | 37054428 | T-C | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 37588777 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g422100 |
| SBS | Chr4 | 1528040 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 10611551 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 14577103 | G-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 25789015 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr4 | 29465214 | C-T | Hetero | UTR_5_PRIME | |
| SBS | Chr4 | 32539377 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake04g260800 |
| SBS | Chr4 | 34639669 | C-A | Homo | INTERGENIC | |
| SBS | Chr5 | 20683447 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 26254275 | C-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake05g232150 |
| SBS | Chr6 | 1061570 | C-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 6586722 | A-T | Homo | INTRON | |
| SBS | Chr6 | 16111378 | C-A | Homo | INTERGENIC | |
| SBS | Chr6 | 20215481 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 20215482 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 23805483 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g209600 |
| SBS | Chr8 | 3133707 | T-G | Homo | INTERGENIC | |
| SBS | Chr8 | 3337439 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 3552978 | A-G | Homo | INTERGENIC | |
| SBS | Chr11 | 8323116 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 21377093 | G-A | Hetero | INTERGENIC |
Deletions: 17
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 1029718 | 1029721 | 3 | |
| Deletion | Chr10 | 1399302 | 1399303 | 1 | |
| Deletion | Chr11 | 4534928 | 4534929 | 1 | |
| Deletion | Chr9 | 10356758 | 10356760 | 2 | OsKitaake09g064200 |
| Deletion | Chr11 | 13939735 | 13939736 | 1 | OsKitaake11g117000 |
| Deletion | Chr4 | 17069847 | 17069849 | 2 | |
| Deletion | Chr4 | 17932544 | 17932554 | 10 | |
| Deletion | Chr11 | 19047780 | 19047785 | 5 | |
| Deletion | Chr1 | 19749382 | 19749386 | 4 | |
| Deletion | Chr1 | 21380739 | 21380745 | 6 | |
| Deletion | Chr11 | 22136244 | 22136248 | 4 | |
| Deletion | Chr6 | 24919442 | 24919444 | 2 | |
| Deletion | Chr6 | 24980419 | 24980420 | 1 | |
| Deletion | Chr1 | 25691013 | 25691016 | 3 | |
| Deletion | Chr11 | 27541328 | 27541398 | 70 | |
| Deletion | Chr6 | 30103158 | 30103159 | 1 | |
| Deletion | Chr4 | 32518879 | 32518881 | 2 | OsKitaake04g260500 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr12 | 574573 | 574578 | 4 |