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Mutant Information

Mutant Name	FN2894-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2894-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6958333 G-A Homo INTRON
SBS Chr1 8735490 A-T Hetero INTERGENIC
SBS Chr1 14832854 G-A Homo INTERGENIC
SBS Chr1 31024157 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g309000
SBS Chr1 32136503 C-T Hetero INTERGENIC
SBS Chr2 9770575 C-T Hetero INTERGENIC
SBS Chr2 18617424 G-A Hetero INTERGENIC
SBS Chr2 25051186 C-T Homo INTERGENIC
SBS Chr3 9701552 T-C Hetero INTERGENIC
SBS Chr3 17614282 T-C Hetero INTERGENIC
SBS Chr3 22233190 A-G Hetero INTERGENIC
SBS Chr3 24643046 C-T Hetero INTERGENIC
SBS Chr3 32927577 C-A Hetero INTERGENIC
SBS Chr4 19099283 A-T Hetero INTRON
SBS Chr5 13233368 G-T Homo INTERGENIC
SBS Chr5 20595486 T-C Hetero INTERGENIC
SBS Chr5 23853474 T-C Hetero INTRON
SBS Chr7 20493642 T-A Hetero INTERGENIC
SBS Chr7 21229623 A-G Homo INTERGENIC
SBS Chr7 25076031 T-A Homo INTRON
SBS Chr8 12459352 G-C Hetero INTERGENIC
SBS Chr8 20587424 T-A Hetero INTERGENIC
SBS Chr9 10807935 C-T Hetero INTERGENIC
SBS Chr9 22647141 G-T Homo INTERGENIC
SBS Chr11 20165494 C-T Homo NON_SYNONYMOUS_CODING OsKitaake11g157600
SBS Chr11 28691850 A-G Hetero INTERGENIC
SBS Chr12 104395 C-G Hetero INTRON

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 728429 728496 67
Deletion Chr9 1021796 1021802 6
Deletion Chr11 1999064 1999068 4 OsKitaake11g028700
Deletion Chr9 3065712 3065714 2
Deletion Chr2 9131863 9131875 12
Deletion Chr9 9611764 9611776 12
Deletion Chr11 9704001 9858000 153999 13
Deletion Chr2 11022784 11022785 1
Deletion Chr10 13218223 13218224 1
Deletion Chr5 16122657 16122658 1
Deletion Chr7 16234500 16234501 1
Deletion Chr11 17538332 17538340 8
Deletion Chr1 17951033 17951048 15
Deletion Chr1 17982330 17982332 2
Deletion Chr8 19216001 19231000 14999
Deletion Chr6 21104794 21104795 1
Deletion Chr10 23991001 24047000 55999 6
Deletion Chr11 24179723 24179742 19
Deletion Chr2 25763935 25763939 4
Deletion Chr1 34018162 34018164 2
Deletion Chr1 35681897 35681902 5
Deletion Chr3 36869999 36870002 3

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 32908443 32908446 2
Insertion Chr7 7050583 7050586 2
Insertion Chr11 19007807 19007810 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 8787147 9703925

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 8787162 Chr3 32399080 OsKitaake03g343100
Translocation Chr8 22071796 Chr6 28058509 2
Translocation Chr6 28058325 Chr3 22873774 OsKitaake06g254600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6958333	G-A	Homo	INTRON
SBS	Chr1	8735490	A-T	Hetero	INTERGENIC
SBS	Chr1	14832854	G-A	Homo	INTERGENIC
SBS	Chr1	31024157	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g309000
SBS	Chr1	32136503	C-T	Hetero	INTERGENIC
SBS	Chr2	9770575	C-T	Hetero	INTERGENIC
SBS	Chr2	18617424	G-A	Hetero	INTERGENIC
SBS	Chr2	25051186	C-T	Homo	INTERGENIC
SBS	Chr3	9701552	T-C	Hetero	INTERGENIC
SBS	Chr3	17614282	T-C	Hetero	INTERGENIC
SBS	Chr3	22233190	A-G	Hetero	INTERGENIC
SBS	Chr3	24643046	C-T	Hetero	INTERGENIC
SBS	Chr3	32927577	C-A	Hetero	INTERGENIC
SBS	Chr4	19099283	A-T	Hetero	INTRON
SBS	Chr5	13233368	G-T	Homo	INTERGENIC
SBS	Chr5	20595486	T-C	Hetero	INTERGENIC
SBS	Chr5	23853474	T-C	Hetero	INTRON
SBS	Chr7	20493642	T-A	Hetero	INTERGENIC
SBS	Chr7	21229623	A-G	Homo	INTERGENIC
SBS	Chr7	25076031	T-A	Homo	INTRON
SBS	Chr8	12459352	G-C	Hetero	INTERGENIC
SBS	Chr8	20587424	T-A	Hetero	INTERGENIC
SBS	Chr9	10807935	C-T	Hetero	INTERGENIC
SBS	Chr9	22647141	G-T	Homo	INTERGENIC
SBS	Chr11	20165494	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g157600
SBS	Chr11	28691850	A-G	Hetero	INTERGENIC
SBS	Chr12	104395	C-G	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	728429	728496	67
Deletion	Chr9	1021796	1021802	6
Deletion	Chr11	1999064	1999068	4	OsKitaake11g028700
Deletion	Chr9	3065712	3065714	2
Deletion	Chr2	9131863	9131875	12
Deletion	Chr9	9611764	9611776	12
Deletion	Chr11	9704001	9858000	153999	13
Deletion	Chr2	11022784	11022785	1
Deletion	Chr10	13218223	13218224	1
Deletion	Chr5	16122657	16122658	1
Deletion	Chr7	16234500	16234501	1
Deletion	Chr11	17538332	17538340	8
Deletion	Chr1	17951033	17951048	15
Deletion	Chr1	17982330	17982332	2
Deletion	Chr8	19216001	19231000	14999
Deletion	Chr6	21104794	21104795	1
Deletion	Chr10	23991001	24047000	55999	6
Deletion	Chr11	24179723	24179742	19
Deletion	Chr2	25763935	25763939	4
Deletion	Chr1	34018162	34018164	2
Deletion	Chr1	35681897	35681902	5
Deletion	Chr3	36869999	36870002	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	8787147	9703925

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes