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Mutant Information

Mutant Name	FN2895-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2895-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 4258043 G-T Hetero INTRON
SBS Chr2 36247523 A-G Hetero INTERGENIC
SBS Chr3 5444153 C-A Hetero SYNONYMOUS_CODING
SBS Chr3 8441247 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g116000
SBS Chr3 23338245 C-T Homo NON_SYNONYMOUS_CODING OsKitaake03g251300
SBS Chr3 24475488 G-A Hetero INTERGENIC
SBS Chr4 26476249 G-A Hetero INTRON
SBS Chr4 33978911 C-A Hetero INTERGENIC
SBS Chr4 35498529 G-T Hetero INTERGENIC
SBS Chr5 20701359 T-G Hetero INTRON
SBS Chr6 4074420 C-A Hetero INTERGENIC
SBS Chr6 4783663 C-G Hetero INTRON
SBS Chr6 11549033 C-T Hetero INTERGENIC
SBS Chr6 11549034 A-T Hetero INTERGENIC
SBS Chr6 27909874 A-T Hetero INTERGENIC
SBS Chr7 1623198 G-A Hetero INTERGENIC
SBS Chr7 6909549 T-A Hetero INTERGENIC
SBS Chr7 12136844 C-T Hetero INTERGENIC
SBS Chr7 17351391 A-T Hetero INTERGENIC
SBS Chr7 17450364 T-C Hetero INTERGENIC
SBS Chr7 18632505 C-T Hetero INTERGENIC
SBS Chr7 20990724 G-T Hetero INTERGENIC
SBS Chr8 10939524 T-A Homo INTRON
SBS Chr8 22318371 C-T Homo INTERGENIC
SBS Chr9 5616028 G-C Hetero INTERGENIC
SBS Chr9 14455687 G-A Hetero INTERGENIC
SBS Chr11 1430320 T-C Hetero INTERGENIC
SBS Chr12 23328006 G-A Hetero INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 9560518 9560520 2
Deletion Chr4 11945010 11945011 1
Deletion Chr2 12628800 12628803 3
Deletion Chr7 13724001 13728000 3999
Deletion Chr2 17866001 18044000 177999 11
Deletion Chr6 21573033 21573057 24
Deletion Chr5 28726588 28726595 7

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 23382250 23382252 1
Insertion Chr12 25755958 25755961 2
Insertion Chr5 30236466 30236474 7

Inversions: 8

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 41560 191875 OsKitaake11g000096
Inversion Chr5 1171221 1918282 OsKitaake05g015100
Inversion Chr5 1632132 1918281 OsKitaake05g018800
Inversion Chr12 14853611 15016299
Inversion Chr7 23025779 23221012 2
Inversion Chr7 23025798 23221064 2
Inversion Chr1 43400613 43682870 OsKitaake01g485600
Inversion Chr1 43400618 43682882 OsKitaake01g485600

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 18013 Chr4 8273013
Translocation Chr11 41565 Chr1 28643661 2
Translocation Chr11 191877 Chr1 28654849 OsKitaake01g277900
Translocation Chr7 1620684 Chr6 23297059 OsKitaake07g022000
Translocation Chr7 1626827 Chr6 23521971 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	4258043	G-T	Hetero	INTRON
SBS	Chr2	36247523	A-G	Hetero	INTERGENIC
SBS	Chr3	5444153	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr3	8441247	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g116000
SBS	Chr3	23338245	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g251300
SBS	Chr3	24475488	G-A	Hetero	INTERGENIC
SBS	Chr4	26476249	G-A	Hetero	INTRON
SBS	Chr4	33978911	C-A	Hetero	INTERGENIC
SBS	Chr4	35498529	G-T	Hetero	INTERGENIC
SBS	Chr5	20701359	T-G	Hetero	INTRON
SBS	Chr6	4074420	C-A	Hetero	INTERGENIC
SBS	Chr6	4783663	C-G	Hetero	INTRON
SBS	Chr6	11549033	C-T	Hetero	INTERGENIC
SBS	Chr6	11549034	A-T	Hetero	INTERGENIC
SBS	Chr6	27909874	A-T	Hetero	INTERGENIC
SBS	Chr7	1623198	G-A	Hetero	INTERGENIC
SBS	Chr7	6909549	T-A	Hetero	INTERGENIC
SBS	Chr7	12136844	C-T	Hetero	INTERGENIC
SBS	Chr7	17351391	A-T	Hetero	INTERGENIC
SBS	Chr7	17450364	T-C	Hetero	INTERGENIC
SBS	Chr7	18632505	C-T	Hetero	INTERGENIC
SBS	Chr7	20990724	G-T	Hetero	INTERGENIC
SBS	Chr8	10939524	T-A	Homo	INTRON
SBS	Chr8	22318371	C-T	Homo	INTERGENIC
SBS	Chr9	5616028	G-C	Hetero	INTERGENIC
SBS	Chr9	14455687	G-A	Hetero	INTERGENIC
SBS	Chr11	1430320	T-C	Hetero	INTERGENIC
SBS	Chr12	23328006	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	9560518	9560520	2
Deletion	Chr4	11945010	11945011	1
Deletion	Chr2	12628800	12628803	3
Deletion	Chr7	13724001	13728000	3999
Deletion	Chr2	17866001	18044000	177999	11
Deletion	Chr6	21573033	21573057	24
Deletion	Chr5	28726588	28726595	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	41560	191875	OsKitaake11g000096
Inversion	Chr5	1171221	1918282	OsKitaake05g015100
Inversion	Chr5	1632132	1918281	OsKitaake05g018800
Inversion	Chr12	14853611	15016299
Inversion	Chr7	23025779	23221012	2
Inversion	Chr7	23025798	23221064	2
Inversion	Chr1	43400613	43682870	OsKitaake01g485600
Inversion	Chr1	43400618	43682882	OsKitaake01g485600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes