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Mutant Information

Mutant Name	FN2896-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2896-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 22284184 A-C Homo INTERGENIC
SBS Chr1 37152964 G-T Hetero INTERGENIC
SBS Chr1 43312888 G-T Hetero INTERGENIC
SBS Chr2 3449083 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g050200
SBS Chr2 3517204 A-G Hetero INTRON
SBS Chr2 14465654 A-T Hetero INTERGENIC
SBS Chr2 24603856 C-T Homo INTERGENIC
SBS Chr2 28549073 C-T Hetero INTERGENIC
SBS Chr2 32579222 G-T Hetero INTERGENIC
SBS Chr3 3538085 G-T Hetero SYNONYMOUS_CODING
SBS Chr4 25547654 C-T Homo INTRON
SBS Chr4 25547656 C-T Homo INTRON
SBS Chr6 7151960 C-A Hetero INTERGENIC
SBS Chr6 8987901 A-G Homo INTERGENIC
SBS Chr6 16427653 T-C Hetero INTERGENIC
SBS Chr7 15810543 C-T Homo INTERGENIC
SBS Chr9 5205321 T-C Hetero INTERGENIC
SBS Chr9 17395114 C-T Homo UTR_5_PRIME
SBS Chr9 17395115 G-A Homo START_GAINED
SBS Chr10 987443 G-A Hetero INTERGENIC
SBS Chr11 12842603 G-T Homo INTERGENIC
SBS Chr11 21384367 G-A Homo INTERGENIC
SBS Chr12 9846992 C-T Homo INTERGENIC
SBS Chr12 13828439 T-A Homo INTRON

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 173590 173594 4
Deletion Chr12 3986001 4002000 15999
Deletion Chr1 4528057 4528059 2
Deletion Chr10 5909522 5909523 1
Deletion Chr12 6439001 6470000 30999 3
Deletion Chr7 6954187 6954191 4
Deletion Chr7 7507818 7507819 1
Deletion Chr5 9876525 9876533 8
Deletion Chr1 12166513 12166516 3
Deletion Chr1 14280001 14300000 19999 OsKitaake01g163200
Deletion Chr9 17395590 17395591 1
Deletion Chr5 18751976 18751981 5
Deletion Chr7 19898964 19898966 2
Deletion Chr1 21628622 21628624 2
Deletion Chr3 24604983 24604985 2
Deletion Chr1 26183521 26183531 10

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 4982619 4982622 2
Insertion Chr8 13474384 13474391 6

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 2353738 2946592 2
Inversion Chr5 2353746 2946603 2
Inversion Chr1 14280998 14377821
Inversion Chr1 14301962 14377823
Inversion Chr3 23106195 23109200
Inversion Chr3 23106200 23109200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22284184	A-C	Homo	INTERGENIC
SBS	Chr1	37152964	G-T	Hetero	INTERGENIC
SBS	Chr1	43312888	G-T	Hetero	INTERGENIC
SBS	Chr2	3449083	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g050200
SBS	Chr2	3517204	A-G	Hetero	INTRON
SBS	Chr2	14465654	A-T	Hetero	INTERGENIC
SBS	Chr2	24603856	C-T	Homo	INTERGENIC
SBS	Chr2	28549073	C-T	Hetero	INTERGENIC
SBS	Chr2	32579222	G-T	Hetero	INTERGENIC
SBS	Chr3	3538085	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	25547654	C-T	Homo	INTRON
SBS	Chr4	25547656	C-T	Homo	INTRON
SBS	Chr6	7151960	C-A	Hetero	INTERGENIC
SBS	Chr6	8987901	A-G	Homo	INTERGENIC
SBS	Chr6	16427653	T-C	Hetero	INTERGENIC
SBS	Chr7	15810543	C-T	Homo	INTERGENIC
SBS	Chr9	5205321	T-C	Hetero	INTERGENIC
SBS	Chr9	17395114	C-T	Homo	UTR_5_PRIME
SBS	Chr9	17395115	G-A	Homo	START_GAINED
SBS	Chr10	987443	G-A	Hetero	INTERGENIC
SBS	Chr11	12842603	G-T	Homo	INTERGENIC
SBS	Chr11	21384367	G-A	Homo	INTERGENIC
SBS	Chr12	9846992	C-T	Homo	INTERGENIC
SBS	Chr12	13828439	T-A	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	173590	173594	4
Deletion	Chr12	3986001	4002000	15999
Deletion	Chr1	4528057	4528059	2
Deletion	Chr10	5909522	5909523	1
Deletion	Chr12	6439001	6470000	30999	3
Deletion	Chr7	6954187	6954191	4
Deletion	Chr7	7507818	7507819	1
Deletion	Chr5	9876525	9876533	8
Deletion	Chr1	12166513	12166516	3
Deletion	Chr1	14280001	14300000	19999	OsKitaake01g163200
Deletion	Chr9	17395590	17395591	1
Deletion	Chr5	18751976	18751981	5
Deletion	Chr7	19898964	19898966	2
Deletion	Chr1	21628622	21628624	2
Deletion	Chr3	24604983	24604985	2
Deletion	Chr1	26183521	26183531	10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	2353738	2946592	2
Inversion	Chr5	2353746	2946603	2
Inversion	Chr1	14280998	14377821
Inversion	Chr1	14301962	14377823
Inversion	Chr3	23106195	23109200
Inversion	Chr3	23106200	23109200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes