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Mutant Information

Mutant Name	FN2897-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2897-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10575514 A-G Hetero INTERGENIC
SBS Chr1 27116501 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g263600
SBS Chr1 29765450 C-T Hetero INTERGENIC
SBS Chr3 4189308 A-G Homo INTERGENIC
SBS Chr3 11096295 A-G Hetero INTERGENIC
SBS Chr3 21757197 G-A Homo INTERGENIC
SBS Chr3 30290524 T-A Hetero INTRON
SBS Chr4 1987296 G-A Hetero INTERGENIC
SBS Chr4 4055564 T-C Hetero INTERGENIC
SBS Chr4 16125734 C-T Homo INTERGENIC
SBS Chr4 28929800 C-A Hetero INTERGENIC
SBS Chr4 35841265 A-T Hetero INTRON
SBS Chr5 3848813 C-T Homo INTERGENIC
SBS Chr5 26455254 A-G Hetero INTRON
SBS Chr5 26930253 A-T Hetero INTERGENIC
SBS Chr6 1590188 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g018900
SBS Chr6 5621264 A-G Hetero INTERGENIC
SBS Chr6 22443183 G-C Hetero INTERGENIC
SBS Chr7 7066710 G-A Hetero INTERGENIC
SBS Chr7 7670479 T-C Hetero INTERGENIC
SBS Chr7 7927427 C-T Hetero INTERGENIC
SBS Chr7 21619957 C-T Hetero INTERGENIC
SBS Chr8 15565946 G-A Homo INTERGENIC
SBS Chr9 3897744 C-T Hetero INTERGENIC
SBS Chr9 16425795 A-T Hetero INTERGENIC
SBS Chr10 8414753 C-T Hetero INTERGENIC
SBS Chr10 12032078 G-T Hetero INTERGENIC
SBS Chr10 12032079 C-G Hetero INTERGENIC
SBS Chr10 13546393 A-G Hetero INTERGENIC
SBS Chr11 15395421 G-A Hetero INTERGENIC
SBS Chr11 18046561 T-C Hetero INTERGENIC
SBS Chr11 25344665 A-T Hetero INTRON
SBS Chr12 11512088 C-T Hetero INTERGENIC
SBS Chr12 14931624 G-T Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 2050008 2050014 6
Deletion Chr5 3615001 3727000 111999 12
Deletion Chr5 3840587 3840590 3
Deletion Chr8 5982509 5982512 3
Deletion Chr8 6308615 6308634 19
Deletion Chr9 6758152 6758155 3
Deletion Chr2 8549552 8549556 4
Deletion Chr10 10031001 10126000 94999 3
Deletion Chr8 14652940 14652941 1
Deletion Chr10 17518295 17518306 11
Deletion Chr1 22195275 22195278 3
Deletion Chr3 22445001 22488000 42999 3
Deletion Chr7 24816490 24816491 1 OsKitaake07g221400
Deletion Chr8 28506548 28506550 2
Deletion Chr2 36477417 36477423 6 OsKitaake02g387100

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 25917710 25917713 2
Insertion Chr3 30082250 30082253 2
Insertion Chr5 19905754 19905759 4
Insertion Chr9 17162371 17162375 3
Insertion Chr1 9692959 9692961 1

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 10031493 10208023 OsKitaake10g058500
Inversion Chr10 10126055 10208333
Inversion Chr9 16427830 16435782
Inversion Chr9 16427834 16435790
Inversion Chr12 21379650 22157703 OsKitaake12g174600
Inversion Chr3 21748910 22486463

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 4708782 Chr4 4969848 2
Translocation Chr7 4709184 Chr4 4969842 2
Translocation Chr10 10208033 Chr1 40011942 OsKitaake01g433400
Translocation Chr10 10208317 Chr1 40011942 OsKitaake01g433400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10575514	A-G	Hetero	INTERGENIC
SBS	Chr1	27116501	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g263600
SBS	Chr1	29765450	C-T	Hetero	INTERGENIC
SBS	Chr3	4189308	A-G	Homo	INTERGENIC
SBS	Chr3	11096295	A-G	Hetero	INTERGENIC
SBS	Chr3	21757197	G-A	Homo	INTERGENIC
SBS	Chr3	30290524	T-A	Hetero	INTRON
SBS	Chr4	1987296	G-A	Hetero	INTERGENIC
SBS	Chr4	4055564	T-C	Hetero	INTERGENIC
SBS	Chr4	16125734	C-T	Homo	INTERGENIC
SBS	Chr4	28929800	C-A	Hetero	INTERGENIC
SBS	Chr4	35841265	A-T	Hetero	INTRON
SBS	Chr5	3848813	C-T	Homo	INTERGENIC
SBS	Chr5	26455254	A-G	Hetero	INTRON
SBS	Chr5	26930253	A-T	Hetero	INTERGENIC
SBS	Chr6	1590188	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g018900
SBS	Chr6	5621264	A-G	Hetero	INTERGENIC
SBS	Chr6	22443183	G-C	Hetero	INTERGENIC
SBS	Chr7	7066710	G-A	Hetero	INTERGENIC
SBS	Chr7	7670479	T-C	Hetero	INTERGENIC
SBS	Chr7	7927427	C-T	Hetero	INTERGENIC
SBS	Chr7	21619957	C-T	Hetero	INTERGENIC
SBS	Chr8	15565946	G-A	Homo	INTERGENIC
SBS	Chr9	3897744	C-T	Hetero	INTERGENIC
SBS	Chr9	16425795	A-T	Hetero	INTERGENIC
SBS	Chr10	8414753	C-T	Hetero	INTERGENIC
SBS	Chr10	12032078	G-T	Hetero	INTERGENIC
SBS	Chr10	12032079	C-G	Hetero	INTERGENIC
SBS	Chr10	13546393	A-G	Hetero	INTERGENIC
SBS	Chr11	15395421	G-A	Hetero	INTERGENIC
SBS	Chr11	18046561	T-C	Hetero	INTERGENIC
SBS	Chr11	25344665	A-T	Hetero	INTRON
SBS	Chr12	11512088	C-T	Hetero	INTERGENIC
SBS	Chr12	14931624	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	2050008	2050014	6
Deletion	Chr5	3615001	3727000	111999	12
Deletion	Chr5	3840587	3840590	3
Deletion	Chr8	5982509	5982512	3
Deletion	Chr8	6308615	6308634	19
Deletion	Chr9	6758152	6758155	3
Deletion	Chr2	8549552	8549556	4
Deletion	Chr10	10031001	10126000	94999	3
Deletion	Chr8	14652940	14652941	1
Deletion	Chr10	17518295	17518306	11
Deletion	Chr1	22195275	22195278	3
Deletion	Chr3	22445001	22488000	42999	3
Deletion	Chr7	24816490	24816491	1	OsKitaake07g221400
Deletion	Chr8	28506548	28506550	2
Deletion	Chr2	36477417	36477423	6	OsKitaake02g387100

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	10031493	10208023	OsKitaake10g058500
Inversion	Chr10	10126055	10208333
Inversion	Chr9	16427830	16435782
Inversion	Chr9	16427834	16435790
Inversion	Chr12	21379650	22157703	OsKitaake12g174600
Inversion	Chr3	21748910	22486463

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes