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Mutant Information |
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Mutant Name | FN2898-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN2898-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Variant Information |
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Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
SBS | Chr1 | 13617935 | G-C | Homo | INTERGENIC | |
SBS | Chr1 | 26042021 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g253500 |
SBS | Chr1 | 30492912 | C-T | Hetero | INTERGENIC | |
SBS | Chr1 | 41459912 | G-A | Homo | INTERGENIC | |
SBS | Chr2 | 8485478 | G-A | Hetero | INTERGENIC | |
SBS | Chr2 | 36607490 | T-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g389600 |
SBS | Chr3 | 16937903 | G-A | Hetero | INTERGENIC | |
SBS | Chr3 | 20013039 | G-T | Hetero | INTERGENIC | |
SBS | Chr3 | 34896488 | G-A | Homo | INTRON | |
SBS | Chr4 | 6200377 | C-T | Hetero | INTERGENIC | |
SBS | Chr4 | 10322307 | G-A | Hetero | INTERGENIC | |
SBS | Chr4 | 21862294 | T-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake04g126000 |
SBS | Chr5 | 15947288 | C-T | Hetero | INTERGENIC | |
SBS | Chr6 | 7211189 | C-A | Hetero | INTERGENIC | |
SBS | Chr6 | 17794080 | A-G | Hetero | INTRON | |
SBS | Chr6 | 30065194 | A-G | Homo | INTRON | |
SBS | Chr7 | 6161136 | A-T | Hetero | INTERGENIC | |
SBS | Chr8 | 12106995 | G-A | Hetero | INTERGENIC | |
SBS | Chr9 | 9317517 | C-T | Homo | INTERGENIC | |
SBS | Chr9 | 9430955 | G-A | Homo | INTERGENIC | |
SBS | Chr9 | 15392761 | A-T | Hetero | INTERGENIC | |
SBS | Chr9 | 18391802 | G-A | Hetero | INTERGENIC | |
SBS | Chr9 | 22163189 | G-A | Hetero | INTERGENIC | |
SBS | Chr10 | 4009685 | C-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake10g030201 |
SBS | Chr10 | 7628273 | C-G | Homo | INTERGENIC | |
SBS | Chr11 | 2596293 | A-T | Hetero | INTERGENIC |
Deletions: 5
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Deletion | Chr3 | 52182 | 52184 | 2 | |
Deletion | Chr4 | 2835049 | 2835053 | 4 | |
Deletion | Chr7 | 7618907 | 7618909 | 2 | |
Deletion | Chr7 | 15020501 | 15020503 | 2 | |
Deletion | Chr3 | 17538124 | 17538125 | 1 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Insertion | Chr1 | 42375297 | 42375300 | 2 | |
Insertion | Chr6 | 26818878 | 26818881 | 2 | |
Insertion | Chr9 | 15411109 | 15411112 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
Inversion | Chr6 | 12388732 | 12593815 | |
Inversion | Chr6 | 12388733 | 12593819 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
Translocation | Chr11 | 15392745 | Chr9 | 12206426 |