Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN2899-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2899-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 15633975 | G-C | Homo | INTERGENIC | |
| SBS | Chr1 | 21596668 | A-T | Homo | INTERGENIC | |
| SBS | Chr1 | 40069417 | A-T | Homo | INTRON | |
| SBS | Chr2 | 26554047 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 15554793 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 20004229 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 20295829 | G-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 22472146 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 25369755 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 5424033 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 5532447 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 6329926 | C-T | Hetero | INTRON | |
| SBS | Chr4 | 7637423 | T-C | Hetero | INTRON | |
| SBS | Chr4 | 7637425 | G-T | Hetero | INTRON | |
| SBS | Chr4 | 12400884 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 34163199 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 1888245 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 16826406 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 19925505 | C-A | Homo | INTERGENIC | |
| SBS | Chr6 | 21193709 | G-C | Homo | INTRON | |
| SBS | Chr7 | 9802276 | G-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 4169663 | C-A | Homo | INTERGENIC | |
| SBS | Chr9 | 20494149 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 4620667 | C-G | Homo | INTRON | |
| SBS | Chr12 | 11986800 | A-G | Hetero | INTRON | |
| SBS | Chr12 | 12261854 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 18428841 | A-T | Homo | INTERGENIC | |
| SBS | Chr12 | 19344220 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 22374161 | C-A | Homo | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 1065595 | 1065602 | 7 | |
| Deletion | Chr5 | 1843355 | 1843358 | 3 | |
| Deletion | Chr8 | 2607271 | 2607273 | 2 | |
| Deletion | Chr6 | 5439378 | 5439384 | 6 | OsKitaake06g072900 |
| Deletion | Chr11 | 11551315 | 11551321 | 6 | |
| Deletion | Chr4 | 15074681 | 15074685 | 4 | |
| Deletion | Chr5 | 20408525 | 20408526 | 1 | |
| Deletion | Chr12 | 21062001 | 21068000 | 5999 | OsKitaake12g164800 |
| Deletion | Chr6 | 23097654 | 23097656 | 2 | |
| Deletion | Chr3 | 31323261 | 31323262 | 1 | |
| Deletion | Chr3 | 31377370 | 31377384 | 14 | |
| Deletion | Chr1 | 43839163 | 43839165 | 2 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr11 | 22703057 | 22703060 | 2 | |
| Insertion | Chr12 | 2424860 | 2424863 | 2 | |
| Insertion | Chr5 | 12424485 | 12424487 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 23888444 | 24192321 | OsKitaake12g194700 |
| Inversion | Chr1 | 31462264 | 31597868 | OsKitaake01g317700 |