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Mutant Information

Mutant Name	FN2901-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2901-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15361690 G-A Hetero INTERGENIC
SBS Chr1 15441048 C-G Hetero INTRON
SBS Chr1 15485552 T-C Hetero INTERGENIC
SBS Chr1 22356575 A-T Hetero INTERGENIC
SBS Chr1 28716630 G-T Hetero INTRON
SBS Chr1 29086206 T-C Hetero INTRON
SBS Chr1 29615691 C-T Hetero INTERGENIC
SBS Chr1 31119405 A-C Hetero INTERGENIC
SBS Chr2 20738125 C-A Hetero INTERGENIC
SBS Chr2 21657940 C-T Hetero INTERGENIC
SBS Chr2 28096267 T-A Hetero UTR_5_PRIME
SBS Chr3 2796059 G-T Hetero INTERGENIC
SBS Chr3 3236842 C-T Hetero INTERGENIC
SBS Chr4 8933239 A-G Homo INTERGENIC
SBS Chr4 9502088 G-A Hetero INTERGENIC
SBS Chr4 9584046 A-C Hetero INTERGENIC
SBS Chr4 10467660 G-T Hetero INTERGENIC
SBS Chr4 17741133 C-T Hetero INTRON
SBS Chr4 22481039 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake04g132600
SBS Chr5 7510629 C-T Hetero INTERGENIC
SBS Chr5 18249794 C-T Hetero INTERGENIC
SBS Chr5 24455585 A-C Hetero INTERGENIC
SBS Chr6 6657858 G-T Hetero INTERGENIC
SBS Chr6 26546879 G-T Hetero INTERGENIC
SBS Chr8 5181521 C-G Hetero UTR_3_PRIME
SBS Chr8 6544638 T-A Hetero INTERGENIC
SBS Chr8 18173790 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g135000
SBS Chr8 18725262 G-A Hetero INTERGENIC
SBS Chr9 1693133 C-T Hetero INTERGENIC
SBS Chr9 20985003 C-T Hetero INTERGENIC
SBS Chr10 21039212 G-A Homo INTERGENIC
SBS Chr11 1102452 G-T Hetero INTERGENIC
SBS Chr11 3120471 G-A Hetero INTERGENIC
SBS Chr12 6753390 G-A Hetero INTERGENIC
SBS Chr12 9290417 C-T Hetero INTERGENIC

Deletions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 8437367 8437371 4
Deletion Chr3 9783001 9826000 42999 5
Deletion Chr6 14298349 14298534 185
Deletion Chr6 16138059 16138061 2
Deletion Chr1 23195242 23195244 2
Deletion Chr11 28449198 28449200 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 34834499 34834502 2
Insertion Chr4 3416809 3416812 2
Insertion Chr11 2634256 2634259 2
Insertion Chr6 11200865 11200886 20

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 2362260 Chr8 17283416 OsKitaake10g019400
Translocation Chr10 2362756 Chr8 17283419 OsKitaake10g019400
Translocation Chr7 24832327 Chr4 27362663
Translocation Chr7 24832335 Chr4 27363084 OsKitaake04g199400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15361690	G-A	Hetero	INTERGENIC
SBS	Chr1	15441048	C-G	Hetero	INTRON
SBS	Chr1	15485552	T-C	Hetero	INTERGENIC
SBS	Chr1	22356575	A-T	Hetero	INTERGENIC
SBS	Chr1	28716630	G-T	Hetero	INTRON
SBS	Chr1	29086206	T-C	Hetero	INTRON
SBS	Chr1	29615691	C-T	Hetero	INTERGENIC
SBS	Chr1	31119405	A-C	Hetero	INTERGENIC
SBS	Chr2	20738125	C-A	Hetero	INTERGENIC
SBS	Chr2	21657940	C-T	Hetero	INTERGENIC
SBS	Chr2	28096267	T-A	Hetero	UTR_5_PRIME
SBS	Chr3	2796059	G-T	Hetero	INTERGENIC
SBS	Chr3	3236842	C-T	Hetero	INTERGENIC
SBS	Chr4	8933239	A-G	Homo	INTERGENIC
SBS	Chr4	9502088	G-A	Hetero	INTERGENIC
SBS	Chr4	9584046	A-C	Hetero	INTERGENIC
SBS	Chr4	10467660	G-T	Hetero	INTERGENIC
SBS	Chr4	17741133	C-T	Hetero	INTRON
SBS	Chr4	22481039	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g132600
SBS	Chr5	7510629	C-T	Hetero	INTERGENIC
SBS	Chr5	18249794	C-T	Hetero	INTERGENIC
SBS	Chr5	24455585	A-C	Hetero	INTERGENIC
SBS	Chr6	6657858	G-T	Hetero	INTERGENIC
SBS	Chr6	26546879	G-T	Hetero	INTERGENIC
SBS	Chr8	5181521	C-G	Hetero	UTR_3_PRIME
SBS	Chr8	6544638	T-A	Hetero	INTERGENIC
SBS	Chr8	18173790	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g135000
SBS	Chr8	18725262	G-A	Hetero	INTERGENIC
SBS	Chr9	1693133	C-T	Hetero	INTERGENIC
SBS	Chr9	20985003	C-T	Hetero	INTERGENIC
SBS	Chr10	21039212	G-A	Homo	INTERGENIC
SBS	Chr11	1102452	G-T	Hetero	INTERGENIC
SBS	Chr11	3120471	G-A	Hetero	INTERGENIC
SBS	Chr12	6753390	G-A	Hetero	INTERGENIC
SBS	Chr12	9290417	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	8437367	8437371	4
Deletion	Chr3	9783001	9826000	42999	5
Deletion	Chr6	14298349	14298534	185
Deletion	Chr6	16138059	16138061	2
Deletion	Chr1	23195242	23195244	2
Deletion	Chr11	28449198	28449200	2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	2362260	Chr8	17283416	OsKitaake10g019400
Translocation	Chr10	2362756	Chr8	17283419	OsKitaake10g019400
Translocation	Chr7	24832327	Chr4	27362663
Translocation	Chr7	24832335	Chr4	27363084	OsKitaake04g199400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes