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| Mutant Information |
|---|
| Mutant Name | FN2902-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2902-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 22081197 | C-T | Hetero | INTRON | |
| SBS | Chr1 | 24253087 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 23533901 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 31258235 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g329000 |
| SBS | Chr3 | 31258236 | G-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr3 | 31429406 | G-C | Homo | INTERGENIC | |
| SBS | Chr3 | 37609835 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 18129035 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 18765830 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 6849696 | T-A | Homo | INTERGENIC | |
| SBS | Chr5 | 14527168 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 12159029 | C-G | Homo | INTERGENIC | |
| SBS | Chr6 | 12571044 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake06g134200 |
| SBS | Chr6 | 19074207 | C-T | Homo | UTR_3_PRIME | |
| SBS | Chr7 | 12249796 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 12488216 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 13888094 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 16556631 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 18864556 | A-T | Homo | INTERGENIC | |
| SBS | Chr8 | 4094064 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 9213253 | T-C | Homo | INTERGENIC | |
| SBS | Chr9 | 5877930 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 15123188 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 19031990 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 4649927 | T-A | Hetero | INTRON | |
| SBS | Chr12 | 11723751 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 22285242 | G-T | Homo | INTERGENIC | |
| SBS | Chr12 | 22285244 | C-T | Homo | INTERGENIC |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 681501 | 681715 | 214 | |
| Deletion | Chr10 | 9431002 | 9431004 | 2 | |
| Deletion | Chr4 | 12299087 | 12299089 | 2 | OsKitaake04g059700 |
| Deletion | Chr10 | 14429001 | 14453000 | 23999 | OsKitaake10g090100 |
| Deletion | Chr3 | 16736088 | 16736090 | 2 | |
| Deletion | Chr9 | 22636753 | 22636755 | 2 | |
| Deletion | Chr2 | 29670107 | 29670110 | 3 | |
| Deletion | Chr4 | 30265010 | 30265021 | 11 | |
| Deletion | Chr2 | 33993001 | 34189000 | 195999 | 19 |
| Deletion | Chr2 | 34195001 | 34349000 | 153999 | 20 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 14390888 | 14390890 | 1 | OsKitaake02g155775  |
| Insertion | Chr4 | 4457804 | 4457806 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 14158965 | 14451236 | |
| Inversion | Chr7 | 22951190 | 23219500 | OsKitaake07g197500 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 25848536 | Chr2 | 32884287 | OsKitaake02g337700 |
| Translocation | Chr8 | 25859074 | Chr2 | 33833940 |