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Mutant Information

Mutant Name	FN2904-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2904-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5696807 C-A Homo INTERGENIC
SBS Chr1 5696808 G-A Homo INTERGENIC
SBS Chr1 5730370 T-A Homo INTERGENIC
SBS Chr1 8982317 C-T Hetero INTERGENIC
SBS Chr1 16264188 C-T Hetero INTERGENIC
SBS Chr1 17485250 G-T Hetero INTERGENIC
SBS Chr2 869189 C-A Hetero INTERGENIC
SBS Chr2 9521353 C-T Hetero INTERGENIC
SBS Chr3 12534070 C-T Homo INTERGENIC
SBS Chr4 16383739 G-A Hetero INTERGENIC
SBS Chr4 19191854 A-G Hetero INTERGENIC
SBS Chr4 19631530 A-T Hetero INTERGENIC
SBS Chr4 28056057 C-T Homo INTERGENIC
SBS Chr5 11362221 C-T Hetero INTERGENIC
SBS Chr5 13502905 G-T Homo INTERGENIC
SBS Chr5 27167566 G-T Hetero INTERGENIC
SBS Chr6 8901400 C-T Hetero SYNONYMOUS_CODING
SBS Chr6 17009854 G-A Hetero INTERGENIC
SBS Chr7 5440365 T-A Homo INTRON
SBS Chr7 18271209 C-A Hetero INTERGENIC
SBS Chr7 20646096 G-A Hetero INTERGENIC
SBS Chr8 9035984 C-T Homo INTERGENIC
SBS Chr9 5663951 C-G Hetero INTERGENIC
SBS Chr9 5952736 G-T Hetero INTRON
SBS Chr9 7389102 G-A Hetero INTRON
SBS Chr9 15608916 G-T Hetero INTERGENIC
SBS Chr10 7339697 T-A Hetero INTERGENIC
SBS Chr10 8889494 G-C Hetero INTERGENIC
SBS Chr10 13299458 A-G Hetero INTERGENIC
SBS Chr10 13808909 C-T Hetero INTERGENIC
SBS Chr10 17466546 G-C Hetero INTERGENIC
SBS Chr10 22584245 T-C Hetero INTERGENIC
SBS Chr11 6859589 A-T Hetero INTERGENIC
SBS Chr12 15778444 T-A Homo INTERGENIC
SBS Chr12 21735399 T-C Homo INTRON
SBS Chr12 25725059 A-T Homo INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 899317 899325 8
Deletion Chr9 2296001 2358000 61999 3
Deletion Chr9 2363001 2411000 47999 4
Deletion Chr7 4108558 4108561 3
Deletion Chr6 7489307 7489308 1
Deletion Chr9 7625935 7625937 2
Deletion Chr9 9056001 9085000 28999 3
Deletion Chr3 14988486 14988492 6
Deletion Chr3 15088001 15118000 29999 5
Deletion Chr10 17069948 17070094 146
Deletion Chr3 21725615 21725616 1
Deletion Chr2 22279229 22279234 5
Deletion Chr7 24439001 24479000 39999 2
Deletion Chr2 29015001 29025000 9999 OsKitaake02g291800
Deletion Chr2 29915322 29915323 1
Deletion Chr3 37665001 37729000 63999 11

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 8300886 8300889 2
Insertion Chr2 18604514 18604517 2
Insertion Chr7 11783654 11783656 1

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 10666929 10734051 OsKitaake01g133000
Inversion Chr1 10734055 11644163 OsKitaake01g133000
Inversion Chr5 11094124 11779793 OsKitaake05g094700
Inversion Chr11 21198681 21915965 OsKitaake11g173500
Inversion Chr11 21198746 21916009 OsKitaake11g173500

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 1106168 Chr1 6939168 OsKitaake01g087300
Translocation Chr9 17584648 Chr6 1190081 OsKitaake06g013900
Translocation Chr3 37728259 Chr1 15731580 OsKitaake03g423800
Translocation Chr3 37728407 Chr1 15731572 OsKitaake03g423800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5696807	C-A	Homo	INTERGENIC
SBS	Chr1	5696808	G-A	Homo	INTERGENIC
SBS	Chr1	5730370	T-A	Homo	INTERGENIC
SBS	Chr1	8982317	C-T	Hetero	INTERGENIC
SBS	Chr1	16264188	C-T	Hetero	INTERGENIC
SBS	Chr1	17485250	G-T	Hetero	INTERGENIC
SBS	Chr2	869189	C-A	Hetero	INTERGENIC
SBS	Chr2	9521353	C-T	Hetero	INTERGENIC
SBS	Chr3	12534070	C-T	Homo	INTERGENIC
SBS	Chr4	16383739	G-A	Hetero	INTERGENIC
SBS	Chr4	19191854	A-G	Hetero	INTERGENIC
SBS	Chr4	19631530	A-T	Hetero	INTERGENIC
SBS	Chr4	28056057	C-T	Homo	INTERGENIC
SBS	Chr5	11362221	C-T	Hetero	INTERGENIC
SBS	Chr5	13502905	G-T	Homo	INTERGENIC
SBS	Chr5	27167566	G-T	Hetero	INTERGENIC
SBS	Chr6	8901400	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr6	17009854	G-A	Hetero	INTERGENIC
SBS	Chr7	5440365	T-A	Homo	INTRON
SBS	Chr7	18271209	C-A	Hetero	INTERGENIC
SBS	Chr7	20646096	G-A	Hetero	INTERGENIC
SBS	Chr8	9035984	C-T	Homo	INTERGENIC
SBS	Chr9	5663951	C-G	Hetero	INTERGENIC
SBS	Chr9	5952736	G-T	Hetero	INTRON
SBS	Chr9	7389102	G-A	Hetero	INTRON
SBS	Chr9	15608916	G-T	Hetero	INTERGENIC
SBS	Chr10	7339697	T-A	Hetero	INTERGENIC
SBS	Chr10	8889494	G-C	Hetero	INTERGENIC
SBS	Chr10	13299458	A-G	Hetero	INTERGENIC
SBS	Chr10	13808909	C-T	Hetero	INTERGENIC
SBS	Chr10	17466546	G-C	Hetero	INTERGENIC
SBS	Chr10	22584245	T-C	Hetero	INTERGENIC
SBS	Chr11	6859589	A-T	Hetero	INTERGENIC
SBS	Chr12	15778444	T-A	Homo	INTERGENIC
SBS	Chr12	21735399	T-C	Homo	INTRON
SBS	Chr12	25725059	A-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	899317	899325	8
Deletion	Chr9	2296001	2358000	61999	3
Deletion	Chr9	2363001	2411000	47999	4
Deletion	Chr7	4108558	4108561	3
Deletion	Chr6	7489307	7489308	1
Deletion	Chr9	7625935	7625937	2
Deletion	Chr9	9056001	9085000	28999	3
Deletion	Chr3	14988486	14988492	6
Deletion	Chr3	15088001	15118000	29999	5
Deletion	Chr10	17069948	17070094	146
Deletion	Chr3	21725615	21725616	1
Deletion	Chr2	22279229	22279234	5
Deletion	Chr7	24439001	24479000	39999	2
Deletion	Chr2	29015001	29025000	9999	OsKitaake02g291800
Deletion	Chr2	29915322	29915323	1
Deletion	Chr3	37665001	37729000	63999	11

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	10666929	10734051	OsKitaake01g133000
Inversion	Chr1	10734055	11644163	OsKitaake01g133000
Inversion	Chr5	11094124	11779793	OsKitaake05g094700
Inversion	Chr11	21198681	21915965	OsKitaake11g173500
Inversion	Chr11	21198746	21916009	OsKitaake11g173500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes