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Mutant Information

Mutant Name	FN2909-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2909-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 886877 C-A Hetero SYNONYMOUS_CODING
SBS Chr1 14193111 G-T Homo INTERGENIC
SBS Chr1 42850476 T-A Hetero INTERGENIC
SBS Chr2 514543 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g007600
SBS Chr2 1051772 G-A Hetero INTERGENIC
SBS Chr2 1051773 G-A Hetero INTERGENIC
SBS Chr2 10280343 T-A Hetero INTERGENIC
SBS Chr2 15566065 T-C Homo INTERGENIC
SBS Chr2 21226305 C-A Homo INTERGENIC
SBS Chr3 18030132 G-T Homo INTERGENIC
SBS Chr3 37157572 C-A Hetero INTERGENIC
SBS Chr4 4136058 G-A Hetero INTERGENIC
SBS Chr4 10821635 C-A Hetero INTERGENIC
SBS Chr4 24583119 C-T Homo UTR_5_PRIME
SBS Chr4 32206950 A-C Hetero INTERGENIC
SBS Chr4 33513367 C-T Hetero INTERGENIC
SBS Chr4 33970512 G-A Hetero INTERGENIC
SBS Chr5 30125408 A-G Homo INTERGENIC
SBS Chr6 6407739 C-T Homo INTRON
SBS Chr6 19836266 G-A Homo INTERGENIC
SBS Chr6 25377354 G-A Homo INTERGENIC
SBS Chr7 5002092 C-T Hetero INTERGENIC
SBS Chr7 18625661 G-T Hetero INTERGENIC
SBS Chr7 19548914 G-C Hetero INTERGENIC
SBS Chr7 21486408 A-C Hetero INTERGENIC
SBS Chr8 3957020 T-C Homo INTERGENIC
SBS Chr8 12677931 A-G Hetero INTERGENIC
SBS Chr8 19889449 A-T Hetero INTERGENIC
SBS Chr9 2996881 A-G Hetero UTR_5_PRIME
SBS Chr9 8704784 T-C Hetero INTERGENIC
SBS Chr11 491239 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake11g005200
SBS Chr11 8603185 G-A Homo INTERGENIC
SBS Chr11 8815348 A-T Hetero INTERGENIC
SBS Chr11 14674067 G-A Homo INTERGENIC
SBS Chr12 8953366 G-A Hetero INTERGENIC

Deletions: 30

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 510703 510711 8
Deletion Chr12 804001 820000 15999 OsKitaake12g011400
Deletion Chr10 6090586 6090588 2
Deletion Chr7 6294775 6294776 1
Deletion Chr11 8755001 8777000 21999 OsKitaake11g094700
Deletion Chr9 8783001 8804000 20999
Deletion Chr11 9194313 9194316 3
Deletion Chr11 11289755 11289770 15
Deletion Chr11 11901342 11901343 1
Deletion Chr10 12481232 12481233 1
Deletion Chr2 13064303 13064325 22
Deletion Chr9 13872399 13872401 2
Deletion Chr3 14115950 14115952 2
Deletion Chr1 15037551 15037555 4
Deletion Chr10 15762366 15762454 88
Deletion Chr9 15821108 15821124 16
Deletion Chr5 18713001 18736000 22999 OsKitaake05g146000
Deletion Chr2 20204001 20222000 17999
Deletion Chr3 20500978 20500986 8
Deletion Chr1 20969281 20969284 3
Deletion Chr12 21311498 21311505 7
Deletion Chr9 22288001 22313000 24999 2
Deletion Chr8 23721001 23739000 17999
Deletion Chr3 24651001 24657000 5999 OsKitaake03g263500
Deletion Chr12 25187183 25187221 38
Deletion Chr12 25613001 25629000 15999 2
Deletion Chr3 26634001 26654000 19999
Deletion Chr2 27542001 27565000 22999 3
Deletion Chr6 29106415 29106416 1
Deletion Chr4 29380265 29380295 30 OsKitaake04g224300

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 7780806 7780808 1
Insertion Chr3 4706092 4706095 2
Insertion Chr6 26228257 26228260 2
Insertion Chr9 1245694 1245697 2
Insertion Chr4 9487228 9487230 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 22504428 22508000
Inversion Chr3 22506813 22508001

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 19651554 Chr2 19469826
Translocation Chr8 19654437 Chr2 19469819
Translocation Chr8 26777319 Chr5 26800811 OsKitaake05g239300
Translocation Chr8 26777386 Chr5 26799328 OsKitaake05g239250

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	886877	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	14193111	G-T	Homo	INTERGENIC
SBS	Chr1	42850476	T-A	Hetero	INTERGENIC
SBS	Chr2	514543	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g007600
SBS	Chr2	1051772	G-A	Hetero	INTERGENIC
SBS	Chr2	1051773	G-A	Hetero	INTERGENIC
SBS	Chr2	10280343	T-A	Hetero	INTERGENIC
SBS	Chr2	15566065	T-C	Homo	INTERGENIC
SBS	Chr2	21226305	C-A	Homo	INTERGENIC
SBS	Chr3	18030132	G-T	Homo	INTERGENIC
SBS	Chr3	37157572	C-A	Hetero	INTERGENIC
SBS	Chr4	4136058	G-A	Hetero	INTERGENIC
SBS	Chr4	10821635	C-A	Hetero	INTERGENIC
SBS	Chr4	24583119	C-T	Homo	UTR_5_PRIME
SBS	Chr4	32206950	A-C	Hetero	INTERGENIC
SBS	Chr4	33513367	C-T	Hetero	INTERGENIC
SBS	Chr4	33970512	G-A	Hetero	INTERGENIC
SBS	Chr5	30125408	A-G	Homo	INTERGENIC
SBS	Chr6	6407739	C-T	Homo	INTRON
SBS	Chr6	19836266	G-A	Homo	INTERGENIC
SBS	Chr6	25377354	G-A	Homo	INTERGENIC
SBS	Chr7	5002092	C-T	Hetero	INTERGENIC
SBS	Chr7	18625661	G-T	Hetero	INTERGENIC
SBS	Chr7	19548914	G-C	Hetero	INTERGENIC
SBS	Chr7	21486408	A-C	Hetero	INTERGENIC
SBS	Chr8	3957020	T-C	Homo	INTERGENIC
SBS	Chr8	12677931	A-G	Hetero	INTERGENIC
SBS	Chr8	19889449	A-T	Hetero	INTERGENIC
SBS	Chr9	2996881	A-G	Hetero	UTR_5_PRIME
SBS	Chr9	8704784	T-C	Hetero	INTERGENIC
SBS	Chr11	491239	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g005200
SBS	Chr11	8603185	G-A	Homo	INTERGENIC
SBS	Chr11	8815348	A-T	Hetero	INTERGENIC
SBS	Chr11	14674067	G-A	Homo	INTERGENIC
SBS	Chr12	8953366	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	510703	510711	8
Deletion	Chr12	804001	820000	15999	OsKitaake12g011400
Deletion	Chr10	6090586	6090588	2
Deletion	Chr7	6294775	6294776	1
Deletion	Chr11	8755001	8777000	21999	OsKitaake11g094700
Deletion	Chr9	8783001	8804000	20999
Deletion	Chr11	9194313	9194316	3
Deletion	Chr11	11289755	11289770	15
Deletion	Chr11	11901342	11901343	1
Deletion	Chr10	12481232	12481233	1
Deletion	Chr2	13064303	13064325	22
Deletion	Chr9	13872399	13872401	2
Deletion	Chr3	14115950	14115952	2
Deletion	Chr1	15037551	15037555	4
Deletion	Chr10	15762366	15762454	88
Deletion	Chr9	15821108	15821124	16
Deletion	Chr5	18713001	18736000	22999	OsKitaake05g146000
Deletion	Chr2	20204001	20222000	17999
Deletion	Chr3	20500978	20500986	8
Deletion	Chr1	20969281	20969284	3
Deletion	Chr12	21311498	21311505	7
Deletion	Chr9	22288001	22313000	24999	2
Deletion	Chr8	23721001	23739000	17999
Deletion	Chr3	24651001	24657000	5999	OsKitaake03g263500
Deletion	Chr12	25187183	25187221	38
Deletion	Chr12	25613001	25629000	15999	2
Deletion	Chr3	26634001	26654000	19999
Deletion	Chr2	27542001	27565000	22999	3
Deletion	Chr6	29106415	29106416	1
Deletion	Chr4	29380265	29380295	30	OsKitaake04g224300

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	22504428	22508000
Inversion	Chr3	22506813	22508001

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes