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| Mutant Information |
|---|
| Mutant Name | FN2912-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2912-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 36
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 30445845 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 41110383 | T-C | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 2784471 | A-T | Homo | INTERGENIC | |
| SBS | Chr3 | 12058210 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 15037922 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 24750902 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 25065704 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 8367117 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 22461677 | C-T | Homo | UTR_3_PRIME | |
| SBS | Chr4 | 29244022 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 35316446 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 2248322 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 6554103 | A-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 8778956 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 14219610 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake05g109000 |
| SBS | Chr5 | 16235642 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 16235643 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 26726475 | G-T | Hetero | UTR_5_PRIME | |
| SBS | Chr7 | 18614772 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 4556477 | T-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 4820419 | A-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 19975753 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 25335996 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 1964749 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 17179924 | A-G | Homo | INTERGENIC | |
| SBS | Chr9 | 22052743 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 12543835 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 20332017 | C-A | Homo | INTRON | |
| SBS | Chr10 | 20332018 | T-A | Homo | INTRON | |
| SBS | Chr10 | 20332019 | C-A | Homo | INTRON | |
| SBS | Chr10 | 21181603 | G-A | Hetero | INTRON | |
| SBS | Chr11 | 2579638 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g037200 |
| SBS | Chr11 | 18901108 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 5206196 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 19627890 | G-A | Hetero | INTRON | |
| SBS | Chr12 | 21359744 | G-C | Hetero | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 1927422 | 1927423 | 1 | OsKitaake03g027600 |
| Deletion | Chr5 | 4251001 | 4266000 | 14999 | |
| Deletion | Chr7 | 6482687 | 6482690 | 3 | OsKitaake07g074750 |
| Deletion | Chr7 | 12917827 | 12917912 | 85 | |
| Deletion | Chr12 | 17291166 | 17291168 | 2 | |
| Deletion | Chr2 | 18949532 | 18949537 | 5 | |
| Deletion | Chr9 | 19685732 | 19685737 | 5 | |
| Deletion | Chr8 | 21254153 | 21254154 | 1 | |
| Deletion | Chr2 | 21568005 | 21568007 | 2 | |
| Deletion | Chr4 | 21724853 | 21724856 | 3 | |
| Deletion | Chr2 | 21748273 | 21748292 | 19 | |
| Deletion | Chr11 | 26535498 | 26535503 | 5 | |
| Deletion | Chr7 | 29229001 | 29255000 | 25999 | 5 |
| Deletion | Chr1 | 43431302 | 43431304 | 2 |
Insertions: 5
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 8768875 | 9366660 | |
| Inversion | Chr12 | 8768885 | 9366665 |