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Mutant Information

Mutant Name	FN2913-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2913-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 55

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 233574 C-T Homo INTERGENIC
SBS Chr1 494165 G-A Hetero INTERGENIC
SBS Chr1 6946604 A-G Hetero INTERGENIC
SBS Chr1 7132242 G-A Homo INTERGENIC
SBS Chr1 14539527 T-C Hetero INTERGENIC
SBS Chr1 22553771 G-A Hetero INTERGENIC
SBS Chr1 24117939 G-T Hetero INTERGENIC
SBS Chr1 24117940 A-T Hetero INTERGENIC
SBS Chr1 33115889 C-T Hetero INTERGENIC
SBS Chr1 34455863 G-A Hetero STOP_GAINED OsKitaake01g360600
SBS Chr1 35060640 A-T Hetero INTERGENIC
SBS Chr2 16533366 A-T Hetero INTERGENIC
SBS Chr2 20606349 G-A Homo INTERGENIC
SBS Chr2 23409064 G-A Homo INTERGENIC
SBS Chr2 35504927 T-A Homo INTERGENIC
SBS Chr4 2167612 C-T Homo INTERGENIC
SBS Chr4 11053862 G-A Homo INTERGENIC
SBS Chr4 18365513 A-C Homo INTERGENIC
SBS Chr4 19370240 A-T Hetero INTRON
SBS Chr5 19148292 G-A Hetero SYNONYMOUS_CODING
SBS Chr5 20732677 C-A Hetero INTRON
SBS Chr5 20732678 A-T Hetero INTRON
SBS Chr5 20732679 C-T Hetero INTRON
SBS Chr6 1686422 G-A Hetero INTRON
SBS Chr7 26349022 G-A Hetero INTERGENIC
SBS Chr7 27865797 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g260800
SBS Chr8 1314893 A-T Homo INTERGENIC
SBS Chr8 1421301 G-A Hetero INTERGENIC
SBS Chr8 2732303 G-A Homo INTERGENIC
SBS Chr8 3714589 A-G Homo SYNONYMOUS_CODING
SBS Chr9 4577601 A-G Hetero INTERGENIC
SBS Chr10 2386542 T-C Hetero INTERGENIC
SBS Chr10 7852394 A-G Hetero INTERGENIC
SBS Chr10 12441202 T-A Hetero INTERGENIC
SBS Chr10 12441203 T-A Hetero INTERGENIC
SBS Chr10 17110373 G-T Homo INTRON
SBS Chr10 18323891 C-T Hetero INTERGENIC
SBS Chr11 945332 T-C Hetero INTERGENIC
SBS Chr11 1548967 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g020300
SBS Chr11 3727323 G-A Homo NON_SYNONYMOUS_CODING OsKitaake11g051900
SBS Chr11 3727324 G-A Homo NON_SYNONYMOUS_CODING OsKitaake11g051900
SBS Chr11 15291161 C-A Hetero INTERGENIC
SBS Chr11 15621755 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake11g125600
SBS Chr11 15643416 A-G Hetero INTERGENIC
SBS Chr11 15680135 A-G Hetero INTERGENIC
SBS Chr11 15766914 G-T Hetero INTERGENIC
SBS Chr11 16230898 G-C Hetero INTERGENIC
SBS Chr11 20968449 C-T Hetero INTERGENIC
SBS Chr12 216273 A-T Homo INTERGENIC
SBS Chr12 2009707 G-A Homo NON_SYNONYMOUS_CODING OsKitaake12g031500
SBS Chr12 8945901 C-T Hetero INTERGENIC
SBS Chr12 8955474 C-G Hetero INTERGENIC
SBS Chr12 10526744 T-G Hetero INTRON
SBS Chr12 14117905 C-G Hetero UTR_3_PRIME
SBS Chr12 14120510 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake12g114900

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 585274 585276 2 OsKitaake05g006200
Deletion Chr10 1101455 1101456 1
Deletion Chr9 6955890 6955892 2
Deletion Chr2 14625215 14625217 2
Deletion Chr6 15515637 15515638 1
Deletion Chr1 16209149 16209151 2
Deletion Chr11 17717882 17718008 126
Deletion Chr2 19245021 19245029 8
Deletion Chr2 20106774 20106779 5
Deletion Chr9 20629725 20629726 1
Deletion Chr12 23949695 23949698 3
Deletion Chr2 25801316 25801321 5
Deletion Chr7 27863315 27863316 1
Deletion Chr3 35079572 35079574 2

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 23499643 23499646 2
Insertion Chr3 26898319 26898323 3
Insertion Chr4 9354692 9354696 3
Insertion Chr4 21760321 21760324 2
Insertion Chr7 20257953 20257956 2
Insertion Chr9 12736075 12736078 2
Insertion Chr12 20733780 20733784 3

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	233574	C-T	Homo	INTERGENIC
SBS	Chr1	494165	G-A	Hetero	INTERGENIC
SBS	Chr1	6946604	A-G	Hetero	INTERGENIC
SBS	Chr1	7132242	G-A	Homo	INTERGENIC
SBS	Chr1	14539527	T-C	Hetero	INTERGENIC
SBS	Chr1	22553771	G-A	Hetero	INTERGENIC
SBS	Chr1	24117939	G-T	Hetero	INTERGENIC
SBS	Chr1	24117940	A-T	Hetero	INTERGENIC
SBS	Chr1	33115889	C-T	Hetero	INTERGENIC
SBS	Chr1	34455863	G-A	Hetero	STOP_GAINED	OsKitaake01g360600
SBS	Chr1	35060640	A-T	Hetero	INTERGENIC
SBS	Chr2	16533366	A-T	Hetero	INTERGENIC
SBS	Chr2	20606349	G-A	Homo	INTERGENIC
SBS	Chr2	23409064	G-A	Homo	INTERGENIC
SBS	Chr2	35504927	T-A	Homo	INTERGENIC
SBS	Chr4	2167612	C-T	Homo	INTERGENIC
SBS	Chr4	11053862	G-A	Homo	INTERGENIC
SBS	Chr4	18365513	A-C	Homo	INTERGENIC
SBS	Chr4	19370240	A-T	Hetero	INTRON
SBS	Chr5	19148292	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr5	20732677	C-A	Hetero	INTRON
SBS	Chr5	20732678	A-T	Hetero	INTRON
SBS	Chr5	20732679	C-T	Hetero	INTRON
SBS	Chr6	1686422	G-A	Hetero	INTRON
SBS	Chr7	26349022	G-A	Hetero	INTERGENIC
SBS	Chr7	27865797	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g260800
SBS	Chr8	1314893	A-T	Homo	INTERGENIC
SBS	Chr8	1421301	G-A	Hetero	INTERGENIC
SBS	Chr8	2732303	G-A	Homo	INTERGENIC
SBS	Chr8	3714589	A-G	Homo	SYNONYMOUS_CODING
SBS	Chr9	4577601	A-G	Hetero	INTERGENIC
SBS	Chr10	2386542	T-C	Hetero	INTERGENIC
SBS	Chr10	7852394	A-G	Hetero	INTERGENIC
SBS	Chr10	12441202	T-A	Hetero	INTERGENIC
SBS	Chr10	12441203	T-A	Hetero	INTERGENIC
SBS	Chr10	17110373	G-T	Homo	INTRON
SBS	Chr10	18323891	C-T	Hetero	INTERGENIC
SBS	Chr11	945332	T-C	Hetero	INTERGENIC
SBS	Chr11	1548967	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g020300
SBS	Chr11	3727323	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g051900
SBS	Chr11	3727324	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g051900
SBS	Chr11	15291161	C-A	Hetero	INTERGENIC
SBS	Chr11	15621755	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g125600
SBS	Chr11	15643416	A-G	Hetero	INTERGENIC
SBS	Chr11	15680135	A-G	Hetero	INTERGENIC
SBS	Chr11	15766914	G-T	Hetero	INTERGENIC
SBS	Chr11	16230898	G-C	Hetero	INTERGENIC
SBS	Chr11	20968449	C-T	Hetero	INTERGENIC
SBS	Chr12	216273	A-T	Homo	INTERGENIC
SBS	Chr12	2009707	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g031500
SBS	Chr12	8945901	C-T	Hetero	INTERGENIC
SBS	Chr12	8955474	C-G	Hetero	INTERGENIC
SBS	Chr12	10526744	T-G	Hetero	INTRON
SBS	Chr12	14117905	C-G	Hetero	UTR_3_PRIME
SBS	Chr12	14120510	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g114900

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	585274	585276	2	OsKitaake05g006200
Deletion	Chr10	1101455	1101456	1
Deletion	Chr9	6955890	6955892	2
Deletion	Chr2	14625215	14625217	2
Deletion	Chr6	15515637	15515638	1
Deletion	Chr1	16209149	16209151	2
Deletion	Chr11	17717882	17718008	126
Deletion	Chr2	19245021	19245029	8
Deletion	Chr2	20106774	20106779	5
Deletion	Chr9	20629725	20629726	1
Deletion	Chr12	23949695	23949698	3
Deletion	Chr2	25801316	25801321	5
Deletion	Chr7	27863315	27863316	1
Deletion	Chr3	35079572	35079574	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes