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Mutant Information

Mutant Name	FN2914-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2914-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 18829302 A-G Homo INTRON
SBS Chr1 23107280 G-A Homo INTERGENIC
SBS Chr2 8183883 G-A Hetero INTERGENIC
SBS Chr2 8183884 G-A Hetero INTERGENIC
SBS Chr2 12418494 A-G Hetero INTERGENIC
SBS Chr2 34693157 G-T Homo INTERGENIC
SBS Chr3 13274535 C-T Homo INTERGENIC
SBS Chr3 13659546 C-T Homo INTERGENIC
SBS Chr3 18898746 G-C Hetero INTERGENIC
SBS Chr3 18898747 G-A Hetero INTERGENIC
SBS Chr3 22839383 T-G Hetero UTR_5_PRIME
SBS Chr3 35707129 G-A Hetero INTERGENIC
SBS Chr3 35807295 C-T Hetero INTERGENIC
SBS Chr4 3391120 G-C Homo INTERGENIC
SBS Chr4 11264777 G-T Homo INTERGENIC
SBS Chr4 17648225 G-A Hetero INTRON
SBS Chr4 22154107 A-T Hetero INTERGENIC
SBS Chr4 30127255 A-G Hetero INTERGENIC
SBS Chr5 11777837 G-A Hetero INTERGENIC
SBS Chr6 17840290 T-G Hetero INTERGENIC
SBS Chr7 8454289 C-G Hetero INTERGENIC
SBS Chr7 11100326 G-A Hetero INTRON
SBS Chr8 18178680 G-A Hetero INTERGENIC
SBS Chr8 20412708 T-C Hetero INTERGENIC
SBS Chr8 21025375 G-T Hetero INTERGENIC
SBS Chr9 22452965 C-T Homo START_GAINED
SBS Chr10 13271653 T-C Hetero INTERGENIC
SBS Chr10 19993381 C-T Hetero UTR_5_PRIME
SBS Chr10 20874542 A-T Hetero INTERGENIC
SBS Chr11 8832231 A-C Homo INTERGENIC
SBS Chr11 12684964 T-C Hetero INTERGENIC
SBS Chr11 14535902 T-A Hetero INTRON
SBS Chr11 23075205 A-G Hetero INTERGENIC
SBS Chr11 23075206 G-A Hetero INTERGENIC
SBS Chr11 26845961 T-C Hetero INTERGENIC
SBS Chr12 6601441 G-A Homo INTERGENIC
SBS Chr12 16349497 G-A Homo INTERGENIC
SBS Chr12 20579140 T-C Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 534586 534593 7
Deletion Chr2 1640070 1640072 2
Deletion Chr1 2278405 2278413 8
Deletion Chr4 4190852 4190853 1 OsKitaake04g020400
Deletion Chr12 6601411 6601413 2
Deletion Chr11 12493686 12493695 9
Deletion Chr3 13274488 13274491 3
Deletion Chr3 14516729 14516733 4
Deletion Chr3 17149870 17149872 2
Deletion Chr2 18332282 18332285 3
Deletion Chr2 19574679 19574686 7
Deletion Chr9 19624455 19624456 1 OsKitaake09g160700
Deletion Chr5 21789031 21789036 5
Deletion Chr8 26451206 26451207 1
Deletion Chr1 32839945 32839950 5 OsKitaake01g333600
Deletion Chr4 35446205 35446210 5
Deletion Chr4 35466602 35466607 5

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 14122089 14122092 2
Insertion Chr2 18802191 18802198 6
Insertion Chr7 6393556 6393559 2
Insertion Chr9 15238411 15238414 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 19425223 20192702
Inversion Chr6 19425228 20192876

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18829302	A-G	Homo	INTRON
SBS	Chr1	23107280	G-A	Homo	INTERGENIC
SBS	Chr2	8183883	G-A	Hetero	INTERGENIC
SBS	Chr2	8183884	G-A	Hetero	INTERGENIC
SBS	Chr2	12418494	A-G	Hetero	INTERGENIC
SBS	Chr2	34693157	G-T	Homo	INTERGENIC
SBS	Chr3	13274535	C-T	Homo	INTERGENIC
SBS	Chr3	13659546	C-T	Homo	INTERGENIC
SBS	Chr3	18898746	G-C	Hetero	INTERGENIC
SBS	Chr3	18898747	G-A	Hetero	INTERGENIC
SBS	Chr3	22839383	T-G	Hetero	UTR_5_PRIME
SBS	Chr3	35707129	G-A	Hetero	INTERGENIC
SBS	Chr3	35807295	C-T	Hetero	INTERGENIC
SBS	Chr4	3391120	G-C	Homo	INTERGENIC
SBS	Chr4	11264777	G-T	Homo	INTERGENIC
SBS	Chr4	17648225	G-A	Hetero	INTRON
SBS	Chr4	22154107	A-T	Hetero	INTERGENIC
SBS	Chr4	30127255	A-G	Hetero	INTERGENIC
SBS	Chr5	11777837	G-A	Hetero	INTERGENIC
SBS	Chr6	17840290	T-G	Hetero	INTERGENIC
SBS	Chr7	8454289	C-G	Hetero	INTERGENIC
SBS	Chr7	11100326	G-A	Hetero	INTRON
SBS	Chr8	18178680	G-A	Hetero	INTERGENIC
SBS	Chr8	20412708	T-C	Hetero	INTERGENIC
SBS	Chr8	21025375	G-T	Hetero	INTERGENIC
SBS	Chr9	22452965	C-T	Homo	START_GAINED
SBS	Chr10	13271653	T-C	Hetero	INTERGENIC
SBS	Chr10	19993381	C-T	Hetero	UTR_5_PRIME
SBS	Chr10	20874542	A-T	Hetero	INTERGENIC
SBS	Chr11	8832231	A-C	Homo	INTERGENIC
SBS	Chr11	12684964	T-C	Hetero	INTERGENIC
SBS	Chr11	14535902	T-A	Hetero	INTRON
SBS	Chr11	23075205	A-G	Hetero	INTERGENIC
SBS	Chr11	23075206	G-A	Hetero	INTERGENIC
SBS	Chr11	26845961	T-C	Hetero	INTERGENIC
SBS	Chr12	6601441	G-A	Homo	INTERGENIC
SBS	Chr12	16349497	G-A	Homo	INTERGENIC
SBS	Chr12	20579140	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	534586	534593	7
Deletion	Chr2	1640070	1640072	2
Deletion	Chr1	2278405	2278413	8
Deletion	Chr4	4190852	4190853	1	OsKitaake04g020400
Deletion	Chr12	6601411	6601413	2
Deletion	Chr11	12493686	12493695	9
Deletion	Chr3	13274488	13274491	3
Deletion	Chr3	14516729	14516733	4
Deletion	Chr3	17149870	17149872	2
Deletion	Chr2	18332282	18332285	3
Deletion	Chr2	19574679	19574686	7
Deletion	Chr9	19624455	19624456	1	OsKitaake09g160700
Deletion	Chr5	21789031	21789036	5
Deletion	Chr8	26451206	26451207	1
Deletion	Chr1	32839945	32839950	5	OsKitaake01g333600
Deletion	Chr4	35446205	35446210	5
Deletion	Chr4	35466602	35466607	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	19425223	20192702
Inversion	Chr6	19425228	20192876

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes