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Mutant Information

Mutant Name	FN2915-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2915-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 23

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2058804 G-T Homo UTR_3_PRIME
SBS Chr1 4884052 T-C Hetero UTR_3_PRIME
SBS Chr1 13678638 G-A Hetero INTERGENIC
SBS Chr1 14817338 C-A Hetero INTERGENIC
SBS Chr2 4077506 G-A Hetero INTERGENIC
SBS Chr2 23275946 C-T Hetero INTERGENIC
SBS Chr2 30117079 G-C Hetero INTERGENIC
SBS Chr2 34020858 G-A Homo INTERGENIC
SBS Chr3 9818600 T-A Hetero INTERGENIC
SBS Chr5 20946785 T-C Homo INTERGENIC
SBS Chr6 24248092 G-A Hetero INTERGENIC
SBS Chr7 2180078 T-G Homo INTERGENIC
SBS Chr7 8470045 A-T Hetero INTERGENIC
SBS Chr7 18106203 G-A Homo INTRON
SBS Chr7 23930298 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g211100
SBS Chr8 21937450 C-T Hetero INTERGENIC
SBS Chr10 48949 A-T Hetero INTERGENIC
SBS Chr11 11503379 G-A Homo INTERGENIC
SBS Chr11 13070493 A-T Homo INTERGENIC
SBS Chr11 20885179 C-A Homo INTERGENIC
SBS Chr11 20906343 C-A Homo INTERGENIC
SBS Chr11 25674443 C-T Homo INTERGENIC
SBS Chr12 10715216 A-G Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 1635343 1635345 2
Deletion Chr12 13285113 13285123 10
Deletion Chr9 13860482 13860485 3
Deletion Chr10 16472854 16472860 6
Deletion Chr3 16886623 16886627 4
Deletion Chr12 17390549 17390550 1
Deletion Chr2 17443773 17443795 22
Deletion Chr9 17652262 17652267 5
Deletion Chr6 19016433 19016446 13
Deletion Chr2 20574385 20574387 2 OsKitaake02g200601
Deletion Chr3 21947547 21947553 6
Deletion Chr3 24529243 24529321 78 OsKitaake03g262300
Deletion Chr12 26723647 26723648 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 31603000 31603011 10
Insertion Chr4 19980370 19980373 2
Insertion Chr6 24183681 24183685 3
Insertion Chr8 20543163 20543166 2
Insertion Chr10 23539072 23539076 3
Insertion Chr1 39814436 39814438 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2058804	G-T	Homo	UTR_3_PRIME
SBS	Chr1	4884052	T-C	Hetero	UTR_3_PRIME
SBS	Chr1	13678638	G-A	Hetero	INTERGENIC
SBS	Chr1	14817338	C-A	Hetero	INTERGENIC
SBS	Chr2	4077506	G-A	Hetero	INTERGENIC
SBS	Chr2	23275946	C-T	Hetero	INTERGENIC
SBS	Chr2	30117079	G-C	Hetero	INTERGENIC
SBS	Chr2	34020858	G-A	Homo	INTERGENIC
SBS	Chr3	9818600	T-A	Hetero	INTERGENIC
SBS	Chr5	20946785	T-C	Homo	INTERGENIC
SBS	Chr6	24248092	G-A	Hetero	INTERGENIC
SBS	Chr7	2180078	T-G	Homo	INTERGENIC
SBS	Chr7	8470045	A-T	Hetero	INTERGENIC
SBS	Chr7	18106203	G-A	Homo	INTRON
SBS	Chr7	23930298	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g211100
SBS	Chr8	21937450	C-T	Hetero	INTERGENIC
SBS	Chr10	48949	A-T	Hetero	INTERGENIC
SBS	Chr11	11503379	G-A	Homo	INTERGENIC
SBS	Chr11	13070493	A-T	Homo	INTERGENIC
SBS	Chr11	20885179	C-A	Homo	INTERGENIC
SBS	Chr11	20906343	C-A	Homo	INTERGENIC
SBS	Chr11	25674443	C-T	Homo	INTERGENIC
SBS	Chr12	10715216	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	1635343	1635345	2
Deletion	Chr12	13285113	13285123	10
Deletion	Chr9	13860482	13860485	3
Deletion	Chr10	16472854	16472860	6
Deletion	Chr3	16886623	16886627	4
Deletion	Chr12	17390549	17390550	1
Deletion	Chr2	17443773	17443795	22
Deletion	Chr9	17652262	17652267	5
Deletion	Chr6	19016433	19016446	13
Deletion	Chr2	20574385	20574387	2	OsKitaake02g200601
Deletion	Chr3	21947547	21947553	6
Deletion	Chr3	24529243	24529321	78	OsKitaake03g262300
Deletion	Chr12	26723647	26723648	1

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes