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Mutant Information

Mutant Name	FN2917-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2917-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 19400005 C-A Homo INTERGENIC
SBS Chr1 41929994 G-T Hetero INTERGENIC
SBS Chr2 3275678 A-T Homo INTRON
SBS Chr2 3935828 G-T Homo INTRON
SBS Chr2 5555539 T-A Hetero INTERGENIC
SBS Chr2 24345629 C-A Homo INTERGENIC
SBS Chr3 9448527 C-G Hetero INTERGENIC
SBS Chr3 27580180 C-T Hetero INTERGENIC
SBS Chr4 16678308 T-G Hetero INTERGENIC
SBS Chr5 2030454 C-A Hetero UTR_3_PRIME
SBS Chr5 15093927 T-C Hetero INTERGENIC
SBS Chr5 17154287 G-C Hetero INTERGENIC
SBS Chr5 19542255 G-A Hetero INTERGENIC
SBS Chr5 20537630 C-G Hetero INTERGENIC
SBS Chr5 22071275 G-A Hetero INTERGENIC
SBS Chr5 30263342 A-G Hetero INTERGENIC
SBS Chr6 7685840 G-A Hetero INTERGENIC
SBS Chr6 19849522 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g178200
SBS Chr6 24202078 G-A Homo INTERGENIC
SBS Chr7 10394889 C-T Hetero INTERGENIC
SBS Chr8 9733164 G-A Homo INTERGENIC
SBS Chr8 21633466 G-C Homo NON_SYNONYMOUS_CODING OsKitaake08g163700
SBS Chr8 24983551 C-G Hetero INTERGENIC
SBS Chr9 5260528 G-T Hetero INTERGENIC
SBS Chr9 7182153 C-G Hetero INTERGENIC
SBS Chr10 6878375 G-A Hetero INTERGENIC
SBS Chr10 10841374 T-C Hetero INTRON
SBS Chr10 10841381 T-A Hetero INTRON
SBS Chr10 12191971 G-A Hetero INTERGENIC
SBS Chr10 12191972 C-A Hetero INTERGENIC
SBS Chr10 20191445 C-T Homo INTERGENIC
SBS Chr11 4871306 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake11g062300
SBS Chr11 7514941 C-G Hetero UTR_5_PRIME
SBS Chr12 268392 A-C Hetero INTERGENIC
SBS Chr12 4553824 T-A Hetero INTERGENIC
SBS Chr12 15068569 C-T Hetero INTERGENIC
SBS Chr12 15068571 A-T Hetero INTERGENIC

Deletions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 19769308 19769310 2
Deletion Chr7 22142497 22142502 5
Deletion Chr2 23030150 23030163 13
Deletion Chr2 29569210 29569211 1
Deletion Chr2 36024937 36024939 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 1247873 1247880 6
Insertion Chr3 4426704 4426709 4
Insertion Chr8 20549870 20549873 2
Insertion Chr11 12147566 12147569 2
Insertion Chr8 650878 650882 3

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 11486284 11503470

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 4553482 Chr11 11486279 OsKitaake12g060500
Translocation Chr12 4555662 Chr11 11503465
Translocation Chr5 9306125 Chr4 21410507
Translocation Chr5 9306139 Chr4 21412655

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19400005	C-A	Homo	INTERGENIC
SBS	Chr1	41929994	G-T	Hetero	INTERGENIC
SBS	Chr2	3275678	A-T	Homo	INTRON
SBS	Chr2	3935828	G-T	Homo	INTRON
SBS	Chr2	5555539	T-A	Hetero	INTERGENIC
SBS	Chr2	24345629	C-A	Homo	INTERGENIC
SBS	Chr3	9448527	C-G	Hetero	INTERGENIC
SBS	Chr3	27580180	C-T	Hetero	INTERGENIC
SBS	Chr4	16678308	T-G	Hetero	INTERGENIC
SBS	Chr5	2030454	C-A	Hetero	UTR_3_PRIME
SBS	Chr5	15093927	T-C	Hetero	INTERGENIC
SBS	Chr5	17154287	G-C	Hetero	INTERGENIC
SBS	Chr5	19542255	G-A	Hetero	INTERGENIC
SBS	Chr5	20537630	C-G	Hetero	INTERGENIC
SBS	Chr5	22071275	G-A	Hetero	INTERGENIC
SBS	Chr5	30263342	A-G	Hetero	INTERGENIC
SBS	Chr6	7685840	G-A	Hetero	INTERGENIC
SBS	Chr6	19849522	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g178200
SBS	Chr6	24202078	G-A	Homo	INTERGENIC
SBS	Chr7	10394889	C-T	Hetero	INTERGENIC
SBS	Chr8	9733164	G-A	Homo	INTERGENIC
SBS	Chr8	21633466	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g163700
SBS	Chr8	24983551	C-G	Hetero	INTERGENIC
SBS	Chr9	5260528	G-T	Hetero	INTERGENIC
SBS	Chr9	7182153	C-G	Hetero	INTERGENIC
SBS	Chr10	6878375	G-A	Hetero	INTERGENIC
SBS	Chr10	10841374	T-C	Hetero	INTRON
SBS	Chr10	10841381	T-A	Hetero	INTRON
SBS	Chr10	12191971	G-A	Hetero	INTERGENIC
SBS	Chr10	12191972	C-A	Hetero	INTERGENIC
SBS	Chr10	20191445	C-T	Homo	INTERGENIC
SBS	Chr11	4871306	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g062300
SBS	Chr11	7514941	C-G	Hetero	UTR_5_PRIME
SBS	Chr12	268392	A-C	Hetero	INTERGENIC
SBS	Chr12	4553824	T-A	Hetero	INTERGENIC
SBS	Chr12	15068569	C-T	Hetero	INTERGENIC
SBS	Chr12	15068571	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	19769308	19769310	2
Deletion	Chr7	22142497	22142502	5
Deletion	Chr2	23030150	23030163	13
Deletion	Chr2	29569210	29569211	1
Deletion	Chr2	36024937	36024939	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	11486284	11503470

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes