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Mutant Information

Mutant Name	FN2918-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2918-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10649003 A-C Hetero INTRON
SBS Chr1 37808958 C-T Hetero INTERGENIC
SBS Chr2 11813796 G-A Homo INTRON
SBS Chr2 25657083 G-A Homo INTERGENIC
SBS Chr2 27138549 A-T Homo INTERGENIC
SBS Chr3 716526 A-G Hetero INTRON
SBS Chr3 25495720 C-G Hetero INTERGENIC
SBS Chr3 32290409 T-G Homo INTERGENIC
SBS Chr4 11404400 T-C Homo INTERGENIC
SBS Chr5 3062666 C-T Hetero INTERGENIC
SBS Chr5 3799220 C-T Hetero UTR_3_PRIME
SBS Chr5 6825939 C-T Hetero INTERGENIC
SBS Chr5 9877885 C-T Homo INTERGENIC
SBS Chr6 3076191 A-G Hetero INTERGENIC
SBS Chr6 6235274 C-G Hetero INTERGENIC
SBS Chr6 6279613 C-T Hetero INTERGENIC
SBS Chr6 10123971 C-A Hetero INTRON
SBS Chr6 12139111 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g130900
SBS Chr6 25616351 C-T Homo NON_SYNONYMOUS_CODING OsKitaake06g227800
SBS Chr7 3059194 C-T Hetero INTERGENIC
SBS Chr7 9681317 G-A Homo INTERGENIC
SBS Chr7 13681757 G-C Hetero INTERGENIC
SBS Chr8 15643656 T-A Hetero INTERGENIC
SBS Chr8 15719083 G-A Hetero INTERGENIC
SBS Chr8 21283522 G-C Hetero INTERGENIC
SBS Chr8 21608596 C-T Hetero INTERGENIC
SBS Chr8 26324968 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake08g211100
SBS Chr9 16607440 A-T Homo INTERGENIC
SBS Chr9 19510517 G-A Homo INTERGENIC
SBS Chr10 15251308 C-A Hetero INTERGENIC
SBS Chr11 1402603 G-T Homo NON_SYNONYMOUS_CODING OsKitaake11g018100
SBS Chr11 1402605 A-T Homo NON_SYNONYMOUS_CODING OsKitaake11g018100
SBS Chr11 1402606 C-T Homo NON_SYNONYMOUS_CODING OsKitaake11g018100
SBS Chr11 6281312 T-A Homo INTERGENIC
SBS Chr11 11782111 T-A Homo INTERGENIC
SBS Chr12 6552375 C-T Hetero INTERGENIC

Deletions: 91

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 739001 1059000 319999 42
Deletion Chr3 771172 771174 2
Deletion Chr12 795001 826000 30999 5
Deletion Chr9 1148001 1171000 22999 OsKitaake09g006900
Deletion Chr5 1188001 1200000 11999
Deletion Chr11 1693065 1693068 3
Deletion Chr6 3778001 3819000 40999 2
Deletion Chr7 4286001 4305000 18999 OsKitaake07g054000
Deletion Chr11 4535001 4556000 20999 OsKitaake11g060300
Deletion Chr8 4562001 4589000 26999 4
Deletion Chr5 4800001 4812000 11999
Deletion Chr10 4941001 4985000 43999 OsKitaake10g036200
Deletion Chr2 5079001 5095000 15999 OsKitaake02g070500
Deletion Chr4 5671001 5733000 61999 OsKitaake04g027900
Deletion Chr11 5777001 5796000 18999 2
Deletion Chr2 6375001 6418000 42999 4
Deletion Chr12 6476001 6496000 19999 2
Deletion Chr10 6733001 6743000 9999 2
Deletion Chr5 6886001 6909000 22999 3
Deletion Chr4 7272001 7293000 20999
Deletion Chr12 7633001 7668000 34999 2
Deletion Chr6 8265001 8279000 13999 OsKitaake06g103900
Deletion Chr4 8329001 8355000 25999
Deletion Chr11 8753001 8779000 25999 OsKitaake11g094700
Deletion Chr4 9081001 9096000 14999
Deletion Chr5 9423890 9423896 6
Deletion Chr4 9519001 9561000 41999 2
Deletion Chr4 9634001 9659000 24999
Deletion Chr12 9728001 9753000 24999
Deletion Chr11 10027001 10048000 20999 4
Deletion Chr7 10118001 10176000 57999 8
Deletion Chr4 10201001 10215000 13999
Deletion Chr9 10588001 10636000 47999 3
Deletion Chr7 10870001 10895000 24999 2
Deletion Chr11 10979001 11006000 26999
Deletion Chr1 11300001 11321000 20999 OsKitaake01g138600
Deletion Chr4 11546001 11564000 17999
Deletion Chr6 11569001 11590000 20999
Deletion Chr5 11965001 12040000 74999
Deletion Chr7 12116096 12116097 1
Deletion Chr6 12372001 12406000 33999 2
Deletion Chr6 12543001 12571000 27999 3
Deletion Chr6 13504001 13516000 11999
Deletion Chr11 13587115 13587195 80
Deletion Chr8 14706001 14730000 23999
Deletion Chr7 14758001 14776000 17999 2
Deletion Chr1 14843001 14895000 51999 6
Deletion Chr4 15197001 15221000 23999
Deletion Chr12 15534001 15563000 28999 OsKitaake12g120600
Deletion Chr5 15562001 15586000 23999 4
Deletion Chr11 15845001 15872000 26999 OsKitaake11g127100
Deletion Chr11 15879001 15897000 17999 OsKitaake11g127500
Deletion Chr2 15973001 15997000 23999 2
Deletion Chr12 16012001 16064000 51999 3
Deletion Chr3 16013001 16029000 15999 2
Deletion Chr2 16071001 16096000 24999 OsKitaake02g166300
Deletion Chr12 16131001 16159000 27999
Deletion Chr12 16560001 16587000 26999 OsKitaake12g124900
Deletion Chr5 16667001 16686000 18999 2
Deletion Chr8 17213001 17262000 48999 OsKitaake08g130800
Deletion Chr4 17386001 17422000 35999 5
Deletion Chr3 17719001 17730000 10999
Deletion Chr2 17828001 17903000 74999 2
Deletion Chr5 17898240 17898248 8
Deletion Chr8 18387001 18424000 36999 OsKitaake08g136900
Deletion Chr3 18685001 18712000 26999 OsKitaake03g225500
Deletion Chr12 18922001 18966000 43999 3
Deletion Chr12 19094001 19122000 27999 OsKitaake12g141900
Deletion Chr6 19201009 19201012 3
Deletion Chr8 19250001 19266000 15999
Deletion Chr6 19956001 19984000 27999 2
Deletion Chr3 20571001 20590000 18999
Deletion Chr2 21622001 21639000 16999
Deletion Chr11 21657928 21657935 7 OsKitaake11g171400
Deletion Chr6 21839001 21865000 25999
Deletion Chr7 21935001 21959000 23999 2
Deletion Chr8 23714001 23744000 29999 2
Deletion Chr2 24407001 24429000 21999
Deletion Chr4 24802319 24802321 2
Deletion Chr2 25987609 25987616 7
Deletion Chr2 27540001 27563000 22999 4
Deletion Chr6 28438001 28456000 17999 2
Deletion Chr1 30012329 30012334 5 OsKitaake01g294900
Deletion Chr3 30355001 30372000 16999 OsKitaake03g318500
Deletion Chr1 33300001 33309000 8999 6
Deletion Chr2 33301603 33301604 1
Deletion Chr4 34146001 34166000 19999
Deletion Chr2 35332312 35332322 10
Deletion Chr3 35434505 35434507 2
Deletion Chr1 40414001 40429000 14999 2
Deletion Chr1 42291001 42347000 55999 4

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 15149474 15149478 3
Insertion Chr6 6770631 6770635 3
Insertion Chr4 2898788 2898791 2
Insertion Chr11 12445025 12445027 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 22188205 22377681 2
Inversion Chr9 22188216 22377682 2

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 737364 Chr3 33877640 OsKitaake03g365300
Translocation Chr11 737882 Chr3 33877487 OsKitaake03g365300
Translocation Chr5 1121906 Chr3 18594571
Translocation Chr5 1146465 Chr3 18591321
Translocation Chr11 4353146 Chr5 3522637 OsKitaake05g042600
Translocation Chr11 4353147 Chr5 3522092 OsKitaake05g042600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10649003	A-C	Hetero	INTRON
SBS	Chr1	37808958	C-T	Hetero	INTERGENIC
SBS	Chr2	11813796	G-A	Homo	INTRON
SBS	Chr2	25657083	G-A	Homo	INTERGENIC
SBS	Chr2	27138549	A-T	Homo	INTERGENIC
SBS	Chr3	716526	A-G	Hetero	INTRON
SBS	Chr3	25495720	C-G	Hetero	INTERGENIC
SBS	Chr3	32290409	T-G	Homo	INTERGENIC
SBS	Chr4	11404400	T-C	Homo	INTERGENIC
SBS	Chr5	3062666	C-T	Hetero	INTERGENIC
SBS	Chr5	3799220	C-T	Hetero	UTR_3_PRIME
SBS	Chr5	6825939	C-T	Hetero	INTERGENIC
SBS	Chr5	9877885	C-T	Homo	INTERGENIC
SBS	Chr6	3076191	A-G	Hetero	INTERGENIC
SBS	Chr6	6235274	C-G	Hetero	INTERGENIC
SBS	Chr6	6279613	C-T	Hetero	INTERGENIC
SBS	Chr6	10123971	C-A	Hetero	INTRON
SBS	Chr6	12139111	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g130900
SBS	Chr6	25616351	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g227800
SBS	Chr7	3059194	C-T	Hetero	INTERGENIC
SBS	Chr7	9681317	G-A	Homo	INTERGENIC
SBS	Chr7	13681757	G-C	Hetero	INTERGENIC
SBS	Chr8	15643656	T-A	Hetero	INTERGENIC
SBS	Chr8	15719083	G-A	Hetero	INTERGENIC
SBS	Chr8	21283522	G-C	Hetero	INTERGENIC
SBS	Chr8	21608596	C-T	Hetero	INTERGENIC
SBS	Chr8	26324968	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g211100
SBS	Chr9	16607440	A-T	Homo	INTERGENIC
SBS	Chr9	19510517	G-A	Homo	INTERGENIC
SBS	Chr10	15251308	C-A	Hetero	INTERGENIC
SBS	Chr11	1402603	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g018100
SBS	Chr11	1402605	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g018100
SBS	Chr11	1402606	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g018100
SBS	Chr11	6281312	T-A	Homo	INTERGENIC
SBS	Chr11	11782111	T-A	Homo	INTERGENIC
SBS	Chr12	6552375	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	739001	1059000	319999	42
Deletion	Chr3	771172	771174	2
Deletion	Chr12	795001	826000	30999	5
Deletion	Chr9	1148001	1171000	22999	OsKitaake09g006900
Deletion	Chr5	1188001	1200000	11999
Deletion	Chr11	1693065	1693068	3
Deletion	Chr6	3778001	3819000	40999	2
Deletion	Chr7	4286001	4305000	18999	OsKitaake07g054000
Deletion	Chr11	4535001	4556000	20999	OsKitaake11g060300
Deletion	Chr8	4562001	4589000	26999	4
Deletion	Chr5	4800001	4812000	11999
Deletion	Chr10	4941001	4985000	43999	OsKitaake10g036200
Deletion	Chr2	5079001	5095000	15999	OsKitaake02g070500
Deletion	Chr4	5671001	5733000	61999	OsKitaake04g027900
Deletion	Chr11	5777001	5796000	18999	2
Deletion	Chr2	6375001	6418000	42999	4
Deletion	Chr12	6476001	6496000	19999	2
Deletion	Chr10	6733001	6743000	9999	2
Deletion	Chr5	6886001	6909000	22999	3
Deletion	Chr4	7272001	7293000	20999
Deletion	Chr12	7633001	7668000	34999	2
Deletion	Chr6	8265001	8279000	13999	OsKitaake06g103900
Deletion	Chr4	8329001	8355000	25999
Deletion	Chr11	8753001	8779000	25999	OsKitaake11g094700
Deletion	Chr4	9081001	9096000	14999
Deletion	Chr5	9423890	9423896	6
Deletion	Chr4	9519001	9561000	41999	2
Deletion	Chr4	9634001	9659000	24999
Deletion	Chr12	9728001	9753000	24999
Deletion	Chr11	10027001	10048000	20999	4
Deletion	Chr7	10118001	10176000	57999	8
Deletion	Chr4	10201001	10215000	13999
Deletion	Chr9	10588001	10636000	47999	3
Deletion	Chr7	10870001	10895000	24999	2
Deletion	Chr11	10979001	11006000	26999
Deletion	Chr1	11300001	11321000	20999	OsKitaake01g138600
Deletion	Chr4	11546001	11564000	17999
Deletion	Chr6	11569001	11590000	20999
Deletion	Chr5	11965001	12040000	74999
Deletion	Chr7	12116096	12116097	1
Deletion	Chr6	12372001	12406000	33999	2
Deletion	Chr6	12543001	12571000	27999	3
Deletion	Chr6	13504001	13516000	11999
Deletion	Chr11	13587115	13587195	80
Deletion	Chr8	14706001	14730000	23999
Deletion	Chr7	14758001	14776000	17999	2
Deletion	Chr1	14843001	14895000	51999	6
Deletion	Chr4	15197001	15221000	23999
Deletion	Chr12	15534001	15563000	28999	OsKitaake12g120600
Deletion	Chr5	15562001	15586000	23999	4
Deletion	Chr11	15845001	15872000	26999	OsKitaake11g127100
Deletion	Chr11	15879001	15897000	17999	OsKitaake11g127500
Deletion	Chr2	15973001	15997000	23999	2
Deletion	Chr12	16012001	16064000	51999	3
Deletion	Chr3	16013001	16029000	15999	2
Deletion	Chr2	16071001	16096000	24999	OsKitaake02g166300
Deletion	Chr12	16131001	16159000	27999
Deletion	Chr12	16560001	16587000	26999	OsKitaake12g124900
Deletion	Chr5	16667001	16686000	18999	2
Deletion	Chr8	17213001	17262000	48999	OsKitaake08g130800
Deletion	Chr4	17386001	17422000	35999	5
Deletion	Chr3	17719001	17730000	10999
Deletion	Chr2	17828001	17903000	74999	2
Deletion	Chr5	17898240	17898248	8
Deletion	Chr8	18387001	18424000	36999	OsKitaake08g136900
Deletion	Chr3	18685001	18712000	26999	OsKitaake03g225500
Deletion	Chr12	18922001	18966000	43999	3
Deletion	Chr12	19094001	19122000	27999	OsKitaake12g141900
Deletion	Chr6	19201009	19201012	3
Deletion	Chr8	19250001	19266000	15999
Deletion	Chr6	19956001	19984000	27999	2
Deletion	Chr3	20571001	20590000	18999
Deletion	Chr2	21622001	21639000	16999
Deletion	Chr11	21657928	21657935	7	OsKitaake11g171400
Deletion	Chr6	21839001	21865000	25999
Deletion	Chr7	21935001	21959000	23999	2
Deletion	Chr8	23714001	23744000	29999	2
Deletion	Chr2	24407001	24429000	21999
Deletion	Chr4	24802319	24802321	2
Deletion	Chr2	25987609	25987616	7
Deletion	Chr2	27540001	27563000	22999	4
Deletion	Chr6	28438001	28456000	17999	2
Deletion	Chr1	30012329	30012334	5	OsKitaake01g294900
Deletion	Chr3	30355001	30372000	16999	OsKitaake03g318500
Deletion	Chr1	33300001	33309000	8999	6
Deletion	Chr2	33301603	33301604	1
Deletion	Chr4	34146001	34166000	19999
Deletion	Chr2	35332312	35332322	10
Deletion	Chr3	35434505	35434507	2
Deletion	Chr1	40414001	40429000	14999	2
Deletion	Chr1	42291001	42347000	55999	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	22188205	22377681	2
Inversion	Chr9	22188216	22377682	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes