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Mutant Information

Mutant Name	FN2921-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2921-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3577218 G-A Homo INTERGENIC
SBS Chr1 4642329 G-A Homo INTERGENIC
SBS Chr1 14802467 G-T Hetero INTERGENIC
SBS Chr1 23662386 G-A Hetero INTRON
SBS Chr1 23668301 T-C Hetero UTR_3_PRIME
SBS Chr1 28494273 T-A Homo INTRON
SBS Chr2 505302 C-T Hetero INTERGENIC
SBS Chr2 10718876 T-C Hetero INTRON
SBS Chr2 20172632 G-T Hetero INTERGENIC
SBS Chr2 30548779 T-C Hetero INTERGENIC
SBS Chr2 32457926 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g332000
SBS Chr3 19408352 T-A Homo INTERGENIC
SBS Chr3 30827142 T-G Hetero INTRON
SBS Chr4 7376434 C-T Hetero INTRON
SBS Chr4 11246035 T-C Hetero INTERGENIC
SBS Chr4 21736300 G-T Hetero INTERGENIC
SBS Chr4 27089267 C-T Homo INTERGENIC
SBS Chr5 4274672 A-G Hetero INTERGENIC
SBS Chr7 10211352 C-T Homo INTERGENIC
SBS Chr7 18886319 G-A Homo INTERGENIC
SBS Chr7 19825271 C-T Hetero INTERGENIC
SBS Chr7 21365422 T-A Homo INTERGENIC
SBS Chr9 5902655 C-A Hetero INTERGENIC
SBS Chr9 5902656 G-T Hetero INTERGENIC
SBS Chr9 14438836 C-T Homo INTERGENIC
SBS Chr10 13169757 A-G Homo INTERGENIC
SBS Chr11 3024945 C-G Hetero INTERGENIC
SBS Chr11 20170619 T-C Hetero INTERGENIC
SBS Chr11 21647983 C-A Homo NON_SYNONYMOUS_CODING OsKitaake11g171300
SBS Chr12 7656265 G-C Hetero INTERGENIC
SBS Chr12 11329463 T-A Hetero INTERGENIC
SBS Chr12 11329464 G-A Hetero INTERGENIC
SBS Chr12 15499765 T-C Hetero INTERGENIC
SBS Chr12 15617651 T-G Hetero INTERGENIC
SBS Chr12 18355971 T-C Homo INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 1974993 1974997 4 OsKitaake12g030800
Deletion Chr6 5021552 5021553 1
Deletion Chr8 5900979 5900984 5
Deletion Chr3 7384078 7384097 19
Deletion Chr11 10132680 10132681 1
Deletion Chr10 10504051 10504056 5
Deletion Chr9 11068420 11068422 2
Deletion Chr6 12601674 12601679 5
Deletion Chr1 13965871 13965884 13
Deletion Chr11 22145057 22145061 4
Deletion Chr6 24702948 24702949 1
Deletion Chr1 28495639 28495646 7 OsKitaake01g276466
Deletion Chr6 30414913 30414915 2
Deletion Chr4 36310001 36330000 19999 5

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 17683195 17683198 2
Insertion Chr5 821856 821859 2
Insertion Chr7 7941821 7941824 2
Insertion Chr11 25164777 25164780 2
Insertion Chr8 7323137 7323139 1

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 8316131 Chr4 34229050
Translocation Chr4 36328624 Chr1 7942631
Translocation Chr4 36333062 Chr1 7942620 OsKitaake04g315200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3577218	G-A	Homo	INTERGENIC
SBS	Chr1	4642329	G-A	Homo	INTERGENIC
SBS	Chr1	14802467	G-T	Hetero	INTERGENIC
SBS	Chr1	23662386	G-A	Hetero	INTRON
SBS	Chr1	23668301	T-C	Hetero	UTR_3_PRIME
SBS	Chr1	28494273	T-A	Homo	INTRON
SBS	Chr2	505302	C-T	Hetero	INTERGENIC
SBS	Chr2	10718876	T-C	Hetero	INTRON
SBS	Chr2	20172632	G-T	Hetero	INTERGENIC
SBS	Chr2	30548779	T-C	Hetero	INTERGENIC
SBS	Chr2	32457926	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g332000
SBS	Chr3	19408352	T-A	Homo	INTERGENIC
SBS	Chr3	30827142	T-G	Hetero	INTRON
SBS	Chr4	7376434	C-T	Hetero	INTRON
SBS	Chr4	11246035	T-C	Hetero	INTERGENIC
SBS	Chr4	21736300	G-T	Hetero	INTERGENIC
SBS	Chr4	27089267	C-T	Homo	INTERGENIC
SBS	Chr5	4274672	A-G	Hetero	INTERGENIC
SBS	Chr7	10211352	C-T	Homo	INTERGENIC
SBS	Chr7	18886319	G-A	Homo	INTERGENIC
SBS	Chr7	19825271	C-T	Hetero	INTERGENIC
SBS	Chr7	21365422	T-A	Homo	INTERGENIC
SBS	Chr9	5902655	C-A	Hetero	INTERGENIC
SBS	Chr9	5902656	G-T	Hetero	INTERGENIC
SBS	Chr9	14438836	C-T	Homo	INTERGENIC
SBS	Chr10	13169757	A-G	Homo	INTERGENIC
SBS	Chr11	3024945	C-G	Hetero	INTERGENIC
SBS	Chr11	20170619	T-C	Hetero	INTERGENIC
SBS	Chr11	21647983	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g171300
SBS	Chr12	7656265	G-C	Hetero	INTERGENIC
SBS	Chr12	11329463	T-A	Hetero	INTERGENIC
SBS	Chr12	11329464	G-A	Hetero	INTERGENIC
SBS	Chr12	15499765	T-C	Hetero	INTERGENIC
SBS	Chr12	15617651	T-G	Hetero	INTERGENIC
SBS	Chr12	18355971	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1974993	1974997	4	OsKitaake12g030800
Deletion	Chr6	5021552	5021553	1
Deletion	Chr8	5900979	5900984	5
Deletion	Chr3	7384078	7384097	19
Deletion	Chr11	10132680	10132681	1
Deletion	Chr10	10504051	10504056	5
Deletion	Chr9	11068420	11068422	2
Deletion	Chr6	12601674	12601679	5
Deletion	Chr1	13965871	13965884	13
Deletion	Chr11	22145057	22145061	4
Deletion	Chr6	24702948	24702949	1
Deletion	Chr1	28495639	28495646	7	OsKitaake01g276466
Deletion	Chr6	30414913	30414915	2
Deletion	Chr4	36310001	36330000	19999	5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	8316131	Chr4	34229050
Translocation	Chr4	36328624	Chr1	7942631
Translocation	Chr4	36333062	Chr1	7942620	OsKitaake04g315200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes