Search Kitaake

Mutant Information

Mutant Name	FN2922-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2922-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6520048 G-A Hetero INTRON
SBS Chr1 26550817 A-G Hetero INTERGENIC
SBS Chr1 30422818 C-T Homo INTERGENIC
SBS Chr2 9601367 G-A Homo INTERGENIC
SBS Chr2 9601778 T-C Homo INTERGENIC
SBS Chr3 273583 C-T Hetero START_GAINED
SBS Chr3 1976200 T-A Hetero UTR_3_PRIME
SBS Chr3 22041981 C-A Hetero INTERGENIC
SBS Chr3 25084958 A-G Hetero INTERGENIC
SBS Chr3 25127086 G-A Hetero UTR_5_PRIME
SBS Chr3 30076757 T-A Hetero INTERGENIC
SBS Chr4 3505842 C-T Hetero INTERGENIC
SBS Chr4 6269856 G-A Hetero INTRON
SBS Chr4 17711933 A-G Homo INTERGENIC
SBS Chr4 17962111 A-T Homo INTERGENIC
SBS Chr4 20919082 A-T Homo INTERGENIC
SBS Chr5 29296095 T-G Hetero INTERGENIC
SBS Chr6 7109392 G-A Homo INTERGENIC
SBS Chr6 18340902 C-T Hetero INTERGENIC
SBS Chr6 25233943 A-G Homo INTRON
SBS Chr7 11149833 G-A Hetero INTRON
SBS Chr7 11827868 G-A Hetero INTERGENIC
SBS Chr7 15278128 A-T Hetero INTERGENIC
SBS Chr7 21760530 T-A Hetero INTRON
SBS Chr8 2196399 G-A Homo INTERGENIC
SBS Chr8 13990882 A-G Homo INTERGENIC
SBS Chr8 24292012 A-T Homo INTERGENIC
SBS Chr9 9190531 C-T Hetero INTERGENIC
SBS Chr9 18550548 T-G Hetero INTERGENIC
SBS Chr9 18958997 T-A Hetero INTRON
SBS Chr10 13280092 A-G Homo INTERGENIC
SBS Chr10 18960005 C-T Hetero INTERGENIC
SBS Chr10 23109619 G-C Hetero INTRON
SBS Chr11 4138292 G-T Hetero INTERGENIC
SBS Chr11 16478563 C-G Hetero INTERGENIC
SBS Chr12 11057727 T-G Homo INTERGENIC
SBS Chr12 26645500 A-T Hetero SYNONYMOUS_CODING

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 1530957 1530958 1
Deletion Chr12 6085465 6085470 5
Deletion Chr1 7488299 7488301 2
Deletion Chr8 8445581 8445588 7
Deletion Chr12 12084163 12084165 2
Deletion Chr4 13381933 13381935 2
Deletion Chr6 24203386 24203387 1
Deletion Chr7 24573176 24573177 1
Deletion Chr6 25401582 25401583 1
Deletion Chr2 27539645 27539647 2
Deletion Chr1 44281655 44281657 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 22728723 22728726 2
Insertion Chr3 11414996 11415002 5
Insertion Chr4 2919892 2919895 2
Insertion Chr4 5441273 5441276 2
Insertion Chr11 16709257 16709260 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 11861333 12271200
Inversion Chr6 11862101 12271201
Inversion Chr7 23375979 23601163 2
Inversion Chr7 23375982 23601170 2

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 9199610 Chr11 22240215
Translocation Chr6 11861335 Chr3 32014403
Translocation Chr6 11862087 Chr3 32014411
Translocation Chr11 12526381 Chr4 10451596
Translocation Chr9 18804113 Chr7 13304879 OsKitaake07g117600
Translocation Chr9 18804119 Chr7 13112833

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6520048	G-A	Hetero	INTRON
SBS	Chr1	26550817	A-G	Hetero	INTERGENIC
SBS	Chr1	30422818	C-T	Homo	INTERGENIC
SBS	Chr2	9601367	G-A	Homo	INTERGENIC
SBS	Chr2	9601778	T-C	Homo	INTERGENIC
SBS	Chr3	273583	C-T	Hetero	START_GAINED
SBS	Chr3	1976200	T-A	Hetero	UTR_3_PRIME
SBS	Chr3	22041981	C-A	Hetero	INTERGENIC
SBS	Chr3	25084958	A-G	Hetero	INTERGENIC
SBS	Chr3	25127086	G-A	Hetero	UTR_5_PRIME
SBS	Chr3	30076757	T-A	Hetero	INTERGENIC
SBS	Chr4	3505842	C-T	Hetero	INTERGENIC
SBS	Chr4	6269856	G-A	Hetero	INTRON
SBS	Chr4	17711933	A-G	Homo	INTERGENIC
SBS	Chr4	17962111	A-T	Homo	INTERGENIC
SBS	Chr4	20919082	A-T	Homo	INTERGENIC
SBS	Chr5	29296095	T-G	Hetero	INTERGENIC
SBS	Chr6	7109392	G-A	Homo	INTERGENIC
SBS	Chr6	18340902	C-T	Hetero	INTERGENIC
SBS	Chr6	25233943	A-G	Homo	INTRON
SBS	Chr7	11149833	G-A	Hetero	INTRON
SBS	Chr7	11827868	G-A	Hetero	INTERGENIC
SBS	Chr7	15278128	A-T	Hetero	INTERGENIC
SBS	Chr7	21760530	T-A	Hetero	INTRON
SBS	Chr8	2196399	G-A	Homo	INTERGENIC
SBS	Chr8	13990882	A-G	Homo	INTERGENIC
SBS	Chr8	24292012	A-T	Homo	INTERGENIC
SBS	Chr9	9190531	C-T	Hetero	INTERGENIC
SBS	Chr9	18550548	T-G	Hetero	INTERGENIC
SBS	Chr9	18958997	T-A	Hetero	INTRON
SBS	Chr10	13280092	A-G	Homo	INTERGENIC
SBS	Chr10	18960005	C-T	Hetero	INTERGENIC
SBS	Chr10	23109619	G-C	Hetero	INTRON
SBS	Chr11	4138292	G-T	Hetero	INTERGENIC
SBS	Chr11	16478563	C-G	Hetero	INTERGENIC
SBS	Chr12	11057727	T-G	Homo	INTERGENIC
SBS	Chr12	26645500	A-T	Hetero	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	1530957	1530958	1
Deletion	Chr12	6085465	6085470	5
Deletion	Chr1	7488299	7488301	2
Deletion	Chr8	8445581	8445588	7
Deletion	Chr12	12084163	12084165	2
Deletion	Chr4	13381933	13381935	2
Deletion	Chr6	24203386	24203387	1
Deletion	Chr7	24573176	24573177	1
Deletion	Chr6	25401582	25401583	1
Deletion	Chr2	27539645	27539647	2
Deletion	Chr1	44281655	44281657	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	11861333	12271200
Inversion	Chr6	11862101	12271201
Inversion	Chr7	23375979	23601163	2
Inversion	Chr7	23375982	23601170	2

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes