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Mutant Information

Mutant Name	FN2929-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2929-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 420862 G-C Hetero INTERGENIC
SBS Chr1 6627917 C-A Hetero INTERGENIC
SBS Chr1 16641971 G-T Hetero INTERGENIC
SBS Chr1 21367729 C-T Hetero INTERGENIC
SBS Chr2 157598 T-A Hetero INTERGENIC
SBS Chr2 157599 C-A Hetero INTERGENIC
SBS Chr2 157600 C-A Hetero INTERGENIC
SBS Chr2 5546466 G-A Hetero INTERGENIC
SBS Chr2 9156130 T-G Hetero INTERGENIC
SBS Chr2 16747500 C-T Hetero INTRON
SBS Chr2 28213681 G-T Hetero INTERGENIC
SBS Chr2 29836622 C-T Homo INTERGENIC
SBS Chr3 1280474 C-T Hetero INTERGENIC
SBS Chr3 13068082 G-A Hetero INTRON
SBS Chr3 13716144 C-T Hetero INTERGENIC
SBS Chr3 18070232 C-T Homo INTERGENIC
SBS Chr3 21608649 G-A Homo INTERGENIC
SBS Chr3 21608650 A-T Homo INTERGENIC
SBS Chr3 26608009 T-C Hetero INTERGENIC
SBS Chr4 14130364 G-A Hetero INTERGENIC
SBS Chr4 33041425 C-T Hetero INTERGENIC
SBS Chr6 6982243 T-A Homo INTERGENIC
SBS Chr6 11216505 C-T Homo INTERGENIC
SBS Chr6 11647828 C-T Hetero INTERGENIC
SBS Chr7 6501867 A-C Homo INTERGENIC
SBS Chr7 11777330 T-C Hetero INTRON
SBS Chr7 25272946 A-T Hetero INTERGENIC
SBS Chr8 1144670 G-T Hetero INTERGENIC
SBS Chr8 8642848 A-G Homo INTERGENIC
SBS Chr8 15786121 C-G Hetero INTERGENIC
SBS Chr8 21178341 G-A Hetero INTERGENIC
SBS Chr9 16571324 A-C Hetero INTERGENIC
SBS Chr9 16582371 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake09g121450
SBS Chr10 5706917 G-A Homo INTERGENIC
SBS Chr10 15098003 G-A Hetero INTERGENIC
SBS Chr10 17656651 C-A Hetero INTERGENIC
SBS Chr11 15711336 C-T Hetero INTERGENIC
SBS Chr11 17912397 A-T Homo INTERGENIC
SBS Chr11 18212540 G-T Hetero INTERGENIC
SBS Chr12 7264520 A-T Hetero INTRON
SBS Chr12 22439747 G-T Hetero INTERGENIC

Deletions: 101

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 168281 168283 2
Deletion Chr4 376937 376949 12
Deletion Chr10 540001 558000 17999 OsKitaake10g004100
Deletion Chr12 799001 826000 26999 4
Deletion Chr11 959001 985000 25999 5
Deletion Chr11 1151001 1169000 17999 OsKitaake11g014100
Deletion Chr3 2327837 2327839 2
Deletion Chr6 2791001 2808000 16999 2
Deletion Chr4 3088878 3088882 4
Deletion Chr1 3106193 3106206 13 OsKitaake01g039700
Deletion Chr9 3911001 3947000 35999 OsKitaake09g020900
Deletion Chr12 4221001 4244000 22999 OsKitaake12g057700
Deletion Chr3 4744490 4744493 3
Deletion Chr7 4781001 4823000 41999 5
Deletion Chr3 4909756 4909757 1
Deletion Chr10 4931001 4987000 55999 3
Deletion Chr7 4961001 5001000 39999 2
Deletion Chr8 5142001 5167000 24999 OsKitaake08g056000
Deletion Chr9 5381001 5401000 19999 2
Deletion Chr8 5960001 5974000 13999 OsKitaake08g064600
Deletion Chr6 6034447 6034451 4
Deletion Chr3 6132185 6132191 6
Deletion Chr5 6883001 6910000 26999 3
Deletion Chr1 7251001 7267000 15999 2
Deletion Chr8 7857001 7910000 52999 OsKitaake08g072300
Deletion Chr11 8321001 8337000 15999
Deletion Chr1 8474088 8474092 4
Deletion Chr10 8633001 8645000 11999 OsKitaake10g053100
Deletion Chr9 8788001 8806000 17999
Deletion Chr8 9022573 9022575 2
Deletion Chr12 9467001 9487000 19999 2
Deletion Chr12 9726001 9757000 30999 OsKitaake12g093700
Deletion Chr5 10122001 10159000 36999 OsKitaake05g089901
Deletion Chr4 10199001 10214000 14999
Deletion Chr8 10782942 10783021 79
Deletion Chr5 10800001 10856000 55999 5
Deletion Chr11 10982001 11012000 29999
Deletion Chr4 11270001 11301000 30999
Deletion Chr8 11859001 11877000 17999 OsKitaake08g104200
Deletion Chr12 11897001 11917000 19999 3
Deletion Chr6 12096001 12108000 11999
Deletion Chr9 12505001 12523000 17999 OsKitaake09g082400
Deletion Chr3 12999001 13012000 12999
Deletion Chr5 13042001 13081000 38999 6
Deletion Chr1 13200001 13210000 9999
Deletion Chr6 13682149 13682157 8
Deletion Chr5 13730001 13760000 29999 3
Deletion Chr6 13779904 13779906 2
Deletion Chr5 13783001 13800000 16999 3
Deletion Chr7 14168001 14208000 39999 2
Deletion Chr3 14683369 14683377 8
Deletion Chr3 15171515 15171520 5
Deletion Chr4 15203001 15223000 19999 OsKitaake04g073100
Deletion Chr12 15542001 15563000 20999
Deletion Chr5 15565001 15586000 20999 3
Deletion Chr12 16014001 16058000 43999 3
Deletion Chr5 16094001 16118000 23999 OsKitaake05g123500
Deletion Chr12 16099350 16099358 8
Deletion Chr11 16836001 16886000 49999 3
Deletion Chr3 17012001 17027000 14999
Deletion Chr8 17215001 17252000 36999 OsKitaake08g130800
Deletion Chr11 17383001 17406000 22999
Deletion Chr1 17961105 17961113 8
Deletion Chr12 18185001 18220000 34999 2
Deletion Chr7 18364001 18378000 13999 OsKitaake07g148800
Deletion Chr3 18680001 18714000 33999 OsKitaake03g225500
Deletion Chr5 18710001 18738000 27999 OsKitaake05g146000
Deletion Chr12 18927001 18967000 39999 3
Deletion Chr12 19095001 19121000 25999 OsKitaake12g141900
Deletion Chr8 19247001 19265000 17999
Deletion Chr9 19343328 19343330 2
Deletion Chr6 19508001 19522000 13999
Deletion Chr1 19782001 19803000 20999 OsKitaake01g196901
Deletion Chr5 19842001 19857000 14999 OsKitaake05g157700
Deletion Chr1 20542001 20577000 34999
Deletion Chr6 21846001 21862000 15999
Deletion Chr8 21925001 21954000 28999 OsKitaake08g166000
Deletion Chr1 22684001 22715000 30999 2
Deletion Chr8 23538001 23551000 12999
Deletion Chr6 23559001 23581000 21999 OsKitaake06g207806
Deletion Chr5 23825001 23838000 12999 2
Deletion Chr6 24014001 24027000 12999 OsKitaake06g213000
Deletion Chr12 24480001 24493000 12999 OsKitaake12g197500
Deletion Chr5 24521001 24532000 10999
Deletion Chr3 24769001 24800000 30999
Deletion Chr8 25574001 25599000 24999 5
Deletion Chr7 25863638 25863645 7
Deletion Chr2 25873423 25873440 17
Deletion Chr3 26636001 26655000 18999
Deletion Chr11 27287001 27304000 16999 OsKitaake11g223300
Deletion Chr6 28435001 28453000 17999 2
Deletion Chr2 31891001 31911000 19999 4
Deletion Chr4 33105001 33124000 18999 2
Deletion Chr1 33112136 33112140 4
Deletion Chr3 33498001 33511000 12999
Deletion Chr2 33663572 33663580 8
Deletion Chr4 35389001 35401000 11999 OsKitaake04g299900
Deletion Chr4 36584001 36593000 8999
Deletion Chr1 40410001 40424000 13999 2
Deletion Chr1 42128211 42128216 5
Deletion Chr1 42295001 42346000 50999 3

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 18234954 18234962 7
Insertion Chr4 20678267 20678272 4
Insertion Chr11 5689640 5689642 1 OsKitaake11g069700
Insertion Chr2 20834599 20834602 2
Insertion Chr4 11035443 11035445 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 24729527 24732042 OsKitaake04g162700
Inversion Chr4 24729554 24732049 OsKitaake04g162700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	420862	G-C	Hetero	INTERGENIC
SBS	Chr1	6627917	C-A	Hetero	INTERGENIC
SBS	Chr1	16641971	G-T	Hetero	INTERGENIC
SBS	Chr1	21367729	C-T	Hetero	INTERGENIC
SBS	Chr2	157598	T-A	Hetero	INTERGENIC
SBS	Chr2	157599	C-A	Hetero	INTERGENIC
SBS	Chr2	157600	C-A	Hetero	INTERGENIC
SBS	Chr2	5546466	G-A	Hetero	INTERGENIC
SBS	Chr2	9156130	T-G	Hetero	INTERGENIC
SBS	Chr2	16747500	C-T	Hetero	INTRON
SBS	Chr2	28213681	G-T	Hetero	INTERGENIC
SBS	Chr2	29836622	C-T	Homo	INTERGENIC
SBS	Chr3	1280474	C-T	Hetero	INTERGENIC
SBS	Chr3	13068082	G-A	Hetero	INTRON
SBS	Chr3	13716144	C-T	Hetero	INTERGENIC
SBS	Chr3	18070232	C-T	Homo	INTERGENIC
SBS	Chr3	21608649	G-A	Homo	INTERGENIC
SBS	Chr3	21608650	A-T	Homo	INTERGENIC
SBS	Chr3	26608009	T-C	Hetero	INTERGENIC
SBS	Chr4	14130364	G-A	Hetero	INTERGENIC
SBS	Chr4	33041425	C-T	Hetero	INTERGENIC
SBS	Chr6	6982243	T-A	Homo	INTERGENIC
SBS	Chr6	11216505	C-T	Homo	INTERGENIC
SBS	Chr6	11647828	C-T	Hetero	INTERGENIC
SBS	Chr7	6501867	A-C	Homo	INTERGENIC
SBS	Chr7	11777330	T-C	Hetero	INTRON
SBS	Chr7	25272946	A-T	Hetero	INTERGENIC
SBS	Chr8	1144670	G-T	Hetero	INTERGENIC
SBS	Chr8	8642848	A-G	Homo	INTERGENIC
SBS	Chr8	15786121	C-G	Hetero	INTERGENIC
SBS	Chr8	21178341	G-A	Hetero	INTERGENIC
SBS	Chr9	16571324	A-C	Hetero	INTERGENIC
SBS	Chr9	16582371	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g121450
SBS	Chr10	5706917	G-A	Homo	INTERGENIC
SBS	Chr10	15098003	G-A	Hetero	INTERGENIC
SBS	Chr10	17656651	C-A	Hetero	INTERGENIC
SBS	Chr11	15711336	C-T	Hetero	INTERGENIC
SBS	Chr11	17912397	A-T	Homo	INTERGENIC
SBS	Chr11	18212540	G-T	Hetero	INTERGENIC
SBS	Chr12	7264520	A-T	Hetero	INTRON
SBS	Chr12	22439747	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	168281	168283	2
Deletion	Chr4	376937	376949	12
Deletion	Chr10	540001	558000	17999	OsKitaake10g004100
Deletion	Chr12	799001	826000	26999	4
Deletion	Chr11	959001	985000	25999	5
Deletion	Chr11	1151001	1169000	17999	OsKitaake11g014100
Deletion	Chr3	2327837	2327839	2
Deletion	Chr6	2791001	2808000	16999	2
Deletion	Chr4	3088878	3088882	4
Deletion	Chr1	3106193	3106206	13	OsKitaake01g039700
Deletion	Chr9	3911001	3947000	35999	OsKitaake09g020900
Deletion	Chr12	4221001	4244000	22999	OsKitaake12g057700
Deletion	Chr3	4744490	4744493	3
Deletion	Chr7	4781001	4823000	41999	5
Deletion	Chr3	4909756	4909757	1
Deletion	Chr10	4931001	4987000	55999	3
Deletion	Chr7	4961001	5001000	39999	2
Deletion	Chr8	5142001	5167000	24999	OsKitaake08g056000
Deletion	Chr9	5381001	5401000	19999	2
Deletion	Chr8	5960001	5974000	13999	OsKitaake08g064600
Deletion	Chr6	6034447	6034451	4
Deletion	Chr3	6132185	6132191	6
Deletion	Chr5	6883001	6910000	26999	3
Deletion	Chr1	7251001	7267000	15999	2
Deletion	Chr8	7857001	7910000	52999	OsKitaake08g072300
Deletion	Chr11	8321001	8337000	15999
Deletion	Chr1	8474088	8474092	4
Deletion	Chr10	8633001	8645000	11999	OsKitaake10g053100
Deletion	Chr9	8788001	8806000	17999
Deletion	Chr8	9022573	9022575	2
Deletion	Chr12	9467001	9487000	19999	2
Deletion	Chr12	9726001	9757000	30999	OsKitaake12g093700
Deletion	Chr5	10122001	10159000	36999	OsKitaake05g089901
Deletion	Chr4	10199001	10214000	14999
Deletion	Chr8	10782942	10783021	79
Deletion	Chr5	10800001	10856000	55999	5
Deletion	Chr11	10982001	11012000	29999
Deletion	Chr4	11270001	11301000	30999
Deletion	Chr8	11859001	11877000	17999	OsKitaake08g104200
Deletion	Chr12	11897001	11917000	19999	3
Deletion	Chr6	12096001	12108000	11999
Deletion	Chr9	12505001	12523000	17999	OsKitaake09g082400
Deletion	Chr3	12999001	13012000	12999
Deletion	Chr5	13042001	13081000	38999	6
Deletion	Chr1	13200001	13210000	9999
Deletion	Chr6	13682149	13682157	8
Deletion	Chr5	13730001	13760000	29999	3
Deletion	Chr6	13779904	13779906	2
Deletion	Chr5	13783001	13800000	16999	3
Deletion	Chr7	14168001	14208000	39999	2
Deletion	Chr3	14683369	14683377	8
Deletion	Chr3	15171515	15171520	5
Deletion	Chr4	15203001	15223000	19999	OsKitaake04g073100
Deletion	Chr12	15542001	15563000	20999
Deletion	Chr5	15565001	15586000	20999	3
Deletion	Chr12	16014001	16058000	43999	3
Deletion	Chr5	16094001	16118000	23999	OsKitaake05g123500
Deletion	Chr12	16099350	16099358	8
Deletion	Chr11	16836001	16886000	49999	3
Deletion	Chr3	17012001	17027000	14999
Deletion	Chr8	17215001	17252000	36999	OsKitaake08g130800
Deletion	Chr11	17383001	17406000	22999
Deletion	Chr1	17961105	17961113	8
Deletion	Chr12	18185001	18220000	34999	2
Deletion	Chr7	18364001	18378000	13999	OsKitaake07g148800
Deletion	Chr3	18680001	18714000	33999	OsKitaake03g225500
Deletion	Chr5	18710001	18738000	27999	OsKitaake05g146000
Deletion	Chr12	18927001	18967000	39999	3
Deletion	Chr12	19095001	19121000	25999	OsKitaake12g141900
Deletion	Chr8	19247001	19265000	17999
Deletion	Chr9	19343328	19343330	2
Deletion	Chr6	19508001	19522000	13999
Deletion	Chr1	19782001	19803000	20999	OsKitaake01g196901
Deletion	Chr5	19842001	19857000	14999	OsKitaake05g157700
Deletion	Chr1	20542001	20577000	34999
Deletion	Chr6	21846001	21862000	15999
Deletion	Chr8	21925001	21954000	28999	OsKitaake08g166000
Deletion	Chr1	22684001	22715000	30999	2
Deletion	Chr8	23538001	23551000	12999
Deletion	Chr6	23559001	23581000	21999	OsKitaake06g207806
Deletion	Chr5	23825001	23838000	12999	2
Deletion	Chr6	24014001	24027000	12999	OsKitaake06g213000
Deletion	Chr12	24480001	24493000	12999	OsKitaake12g197500
Deletion	Chr5	24521001	24532000	10999
Deletion	Chr3	24769001	24800000	30999
Deletion	Chr8	25574001	25599000	24999	5
Deletion	Chr7	25863638	25863645	7
Deletion	Chr2	25873423	25873440	17
Deletion	Chr3	26636001	26655000	18999
Deletion	Chr11	27287001	27304000	16999	OsKitaake11g223300
Deletion	Chr6	28435001	28453000	17999	2
Deletion	Chr2	31891001	31911000	19999	4
Deletion	Chr4	33105001	33124000	18999	2
Deletion	Chr1	33112136	33112140	4
Deletion	Chr3	33498001	33511000	12999
Deletion	Chr2	33663572	33663580	8
Deletion	Chr4	35389001	35401000	11999	OsKitaake04g299900
Deletion	Chr4	36584001	36593000	8999
Deletion	Chr1	40410001	40424000	13999	2
Deletion	Chr1	42128211	42128216	5
Deletion	Chr1	42295001	42346000	50999	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	24729527	24732042	OsKitaake04g162700
Inversion	Chr4	24729554	24732049	OsKitaake04g162700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes