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Mutant Information

Mutant Name	FN2932-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2932-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 58

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12243200 G-A Homo INTERGENIC
SBS Chr1 18194733 G-T Hetero INTERGENIC
SBS Chr2 6784222 G-A Homo SYNONYMOUS_CODING
SBS Chr2 7152126 C-A Homo NON_SYNONYMOUS_CODING OsKitaake02g095900
SBS Chr2 8073977 A-T Homo INTERGENIC
SBS Chr2 9757061 G-A Hetero INTERGENIC
SBS Chr2 11957654 C-G Hetero INTERGENIC
SBS Chr2 18595959 A-G Homo INTERGENIC
SBS Chr2 25867760 G-C Homo INTERGENIC
SBS Chr3 1914412 A-C Hetero INTRON
SBS Chr3 3156573 C-T Hetero INTERGENIC
SBS Chr3 14845966 G-A Homo INTERGENIC
SBS Chr3 26484847 C-T Homo SYNONYMOUS_CODING
SBS Chr3 33837561 A-T Homo INTRON
SBS Chr4 6005050 C-T Hetero INTRON
SBS Chr4 9165725 C-T Homo INTERGENIC
SBS Chr4 9619462 T-G Hetero INTERGENIC
SBS Chr4 12986368 T-G Hetero INTERGENIC
SBS Chr4 22099691 C-T Homo INTERGENIC
SBS Chr4 29022169 T-G Homo NON_SYNONYMOUS_CODING OsKitaake04g219100
SBS Chr4 31505191 A-T Homo INTERGENIC
SBS Chr5 905642 C-T Homo INTERGENIC
SBS Chr5 1180530 T-A Hetero INTERGENIC
SBS Chr5 4965228 G-A Hetero INTERGENIC
SBS Chr5 6220419 G-T Hetero INTERGENIC
SBS Chr6 12647284 G-C Homo INTERGENIC
SBS Chr6 27022140 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g242700
SBS Chr7 4925397 T-A Homo INTRON
SBS Chr7 18910950 C-T Hetero INTERGENIC
SBS Chr7 18910955 G-T Hetero INTERGENIC
SBS Chr7 27235034 G-A Hetero INTERGENIC
SBS Chr8 4384412 A-T Hetero INTERGENIC
SBS Chr8 4384418 A-T Hetero INTERGENIC
SBS Chr8 6947782 G-C Hetero INTERGENIC
SBS Chr8 7682654 A-C Hetero INTERGENIC
SBS Chr8 28108883 A-G Homo INTERGENIC
SBS Chr9 3516699 A-T Hetero INTERGENIC
SBS Chr9 13346040 G-T Homo SYNONYMOUS_CODING
SBS Chr9 20835389 A-G Hetero START_GAINED
SBS Chr10 2605709 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake10g020900
SBS Chr10 2974506 G-C Hetero INTERGENIC
SBS Chr10 10343143 C-T Homo INTERGENIC
SBS Chr10 11354604 C-T Homo INTRON
SBS Chr10 20659867 G-A Hetero INTERGENIC
SBS Chr11 11880309 C-T Hetero INTERGENIC
SBS Chr11 13818655 G-T Hetero INTERGENIC
SBS Chr11 14074172 T-C Hetero INTERGENIC
SBS Chr11 16833081 G-A Hetero INTERGENIC
SBS Chr11 24080465 C-T Hetero INTRON
SBS Chr11 25568059 G-A Hetero INTERGENIC
SBS Chr11 28678974 A-G Hetero INTERGENIC
SBS Chr12 4223124 G-T Homo INTERGENIC
SBS Chr12 4223125 C-T Homo INTERGENIC
SBS Chr12 9464977 G-A Hetero INTERGENIC
SBS Chr12 12274843 C-T Hetero INTERGENIC
SBS Chr12 20233250 A-G Hetero INTERGENIC
SBS Chr12 21537149 C-T Homo INTERGENIC
SBS Chr12 23989859 G-A Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1129608 1129617 9
Deletion Chr7 4797001 4811000 13999 2
Deletion Chr5 6444001 6455000 10999
Deletion Chr4 7557766 7557771 5
Deletion Chr10 8654782 8654829 47 OsKitaake10g053166
Deletion Chr9 8787001 8809000 21999
Deletion Chr3 9060921 9060924 3
Deletion Chr9 9635248 9635254 6
Deletion Chr8 9767001 9782000 14999
Deletion Chr3 11094495 11094496 1
Deletion Chr7 14174001 14201000 26999 OsKitaake07g122500
Deletion Chr5 16992938 16992940 2
Deletion Chr7 17330554 17330557 3
Deletion Chr9 18160009 18160017 8
Deletion Chr7 21714377 21714380 3
Deletion Chr4 23148823 23148827 4
Deletion Chr6 23664389 23664390 1
Deletion Chr4 24040925 24040932 7
Deletion Chr2 26580816 26580823 7

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 2142010 2142013 2
Insertion Chr2 30784706 30784709 2 OsKitaake02g306866
Insertion Chr4 6109764 6109766 1
Insertion Chr5 6205447 6205452 4
Insertion Chr5 26039663 26039671 7
Insertion Chr6 4585617 4585623 5
Insertion Chr7 4036415 4036418 2
Insertion Chr4 9806497 9806499 1

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 3651113 Chr1 4270246 2
Translocation Chr10 18577833 Chr3 3648639 OsKitaake03g051500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12243200	G-A	Homo	INTERGENIC
SBS	Chr1	18194733	G-T	Hetero	INTERGENIC
SBS	Chr2	6784222	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr2	7152126	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g095900
SBS	Chr2	8073977	A-T	Homo	INTERGENIC
SBS	Chr2	9757061	G-A	Hetero	INTERGENIC
SBS	Chr2	11957654	C-G	Hetero	INTERGENIC
SBS	Chr2	18595959	A-G	Homo	INTERGENIC
SBS	Chr2	25867760	G-C	Homo	INTERGENIC
SBS	Chr3	1914412	A-C	Hetero	INTRON
SBS	Chr3	3156573	C-T	Hetero	INTERGENIC
SBS	Chr3	14845966	G-A	Homo	INTERGENIC
SBS	Chr3	26484847	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr3	33837561	A-T	Homo	INTRON
SBS	Chr4	6005050	C-T	Hetero	INTRON
SBS	Chr4	9165725	C-T	Homo	INTERGENIC
SBS	Chr4	9619462	T-G	Hetero	INTERGENIC
SBS	Chr4	12986368	T-G	Hetero	INTERGENIC
SBS	Chr4	22099691	C-T	Homo	INTERGENIC
SBS	Chr4	29022169	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g219100
SBS	Chr4	31505191	A-T	Homo	INTERGENIC
SBS	Chr5	905642	C-T	Homo	INTERGENIC
SBS	Chr5	1180530	T-A	Hetero	INTERGENIC
SBS	Chr5	4965228	G-A	Hetero	INTERGENIC
SBS	Chr5	6220419	G-T	Hetero	INTERGENIC
SBS	Chr6	12647284	G-C	Homo	INTERGENIC
SBS	Chr6	27022140	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g242700
SBS	Chr7	4925397	T-A	Homo	INTRON
SBS	Chr7	18910950	C-T	Hetero	INTERGENIC
SBS	Chr7	18910955	G-T	Hetero	INTERGENIC
SBS	Chr7	27235034	G-A	Hetero	INTERGENIC
SBS	Chr8	4384412	A-T	Hetero	INTERGENIC
SBS	Chr8	4384418	A-T	Hetero	INTERGENIC
SBS	Chr8	6947782	G-C	Hetero	INTERGENIC
SBS	Chr8	7682654	A-C	Hetero	INTERGENIC
SBS	Chr8	28108883	A-G	Homo	INTERGENIC
SBS	Chr9	3516699	A-T	Hetero	INTERGENIC
SBS	Chr9	13346040	G-T	Homo	SYNONYMOUS_CODING
SBS	Chr9	20835389	A-G	Hetero	START_GAINED
SBS	Chr10	2605709	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g020900
SBS	Chr10	2974506	G-C	Hetero	INTERGENIC
SBS	Chr10	10343143	C-T	Homo	INTERGENIC
SBS	Chr10	11354604	C-T	Homo	INTRON
SBS	Chr10	20659867	G-A	Hetero	INTERGENIC
SBS	Chr11	11880309	C-T	Hetero	INTERGENIC
SBS	Chr11	13818655	G-T	Hetero	INTERGENIC
SBS	Chr11	14074172	T-C	Hetero	INTERGENIC
SBS	Chr11	16833081	G-A	Hetero	INTERGENIC
SBS	Chr11	24080465	C-T	Hetero	INTRON
SBS	Chr11	25568059	G-A	Hetero	INTERGENIC
SBS	Chr11	28678974	A-G	Hetero	INTERGENIC
SBS	Chr12	4223124	G-T	Homo	INTERGENIC
SBS	Chr12	4223125	C-T	Homo	INTERGENIC
SBS	Chr12	9464977	G-A	Hetero	INTERGENIC
SBS	Chr12	12274843	C-T	Hetero	INTERGENIC
SBS	Chr12	20233250	A-G	Hetero	INTERGENIC
SBS	Chr12	21537149	C-T	Homo	INTERGENIC
SBS	Chr12	23989859	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1129608	1129617	9
Deletion	Chr7	4797001	4811000	13999	2
Deletion	Chr5	6444001	6455000	10999
Deletion	Chr4	7557766	7557771	5
Deletion	Chr10	8654782	8654829	47	OsKitaake10g053166
Deletion	Chr9	8787001	8809000	21999
Deletion	Chr3	9060921	9060924	3
Deletion	Chr9	9635248	9635254	6
Deletion	Chr8	9767001	9782000	14999
Deletion	Chr3	11094495	11094496	1
Deletion	Chr7	14174001	14201000	26999	OsKitaake07g122500
Deletion	Chr5	16992938	16992940	2
Deletion	Chr7	17330554	17330557	3
Deletion	Chr9	18160009	18160017	8
Deletion	Chr7	21714377	21714380	3
Deletion	Chr4	23148823	23148827	4
Deletion	Chr6	23664389	23664390	1
Deletion	Chr4	24040925	24040932	7
Deletion	Chr2	26580816	26580823	7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	3651113	Chr1	4270246	2
Translocation	Chr10	18577833	Chr3	3648639	OsKitaake03g051500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes