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| Mutant Information |
|---|
| Mutant Name | FN2933-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2933-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 3252176 | C-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 4021772 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g054300 |
| SBS | Chr1 | 35456255 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 18757957 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 27737647 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 2696403 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 14064336 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 18503578 | T-C | Homo | INTRON | |
| SBS | Chr3 | 18503579 | G-A | Homo | INTRON | |
| SBS | Chr3 | 34357202 | G-A | Hetero | INTRON | |
| SBS | Chr4 | 21468481 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 21468482 | T-G | Homo | INTERGENIC | |
| SBS | Chr4 | 30585331 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 31446203 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 797898 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 1609018 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 12046892 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 15936578 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 26897297 | T-G | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr7 | 6420979 | A-G | Homo | INTERGENIC | |
| SBS | Chr7 | 13432411 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 28115767 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 2113929 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr10 | 4367685 | G-T | Homo | INTERGENIC | |
| SBS | Chr10 | 10455942 | T-A | Homo | INTERGENIC | |
| SBS | Chr11 | 11435435 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake11g108500 |
| SBS | Chr11 | 11435436 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake11g108500 |
| SBS | Chr11 | 15378761 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 1310448 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 1617815 | C-T | Hetero | INTRON |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 2329752 | 2329755 | 3 | |
| Deletion | Chr8 | 3107503 | 3107507 | 4 | OsKitaake08g035000 |
| Deletion | Chr10 | 8669078 | 8669739 | 661 | |
| Deletion | Chr10 | 10169178 | 10169179 | 1 | |
| Deletion | Chr7 | 10990108 | 10990125 | 17 | |
| Deletion | Chr11 | 11203844 | 11203847 | 3 | |
| Deletion | Chr8 | 12310839 | 12310850 | 11 | |
| Deletion | Chr2 | 14221553 | 14221559 | 6 | |
| Deletion | Chr2 | 14747241 | 14747243 | 2 | |
| Deletion | Chr1 | 16944120 | 16944128 | 8 | |
| Deletion | Chr4 | 19151097 | 19151118 | 21 | |
| Deletion | Chr4 | 21883054 | 21883055 | 1 | |
| Deletion | Chr11 | 25172458 | 25172459 | 1 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr11 | 16129734 | 16129737 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 4533539 | 5126748 | OsKitaake07g062400 |
| Inversion | Chr7 | 4533546 | 5126748 | OsKitaake07g062400 |
Translocations: 6
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 23050 | Chr5 | 7832020 | 2 |
| Translocation | Chr12 | 24791 | Chr5 | 7832021 | 2 |
| Translocation | Chr11 | 915831 | Chr2 | 934266 | |
| Translocation | Chr11 | 915870 | Chr2 | 934259 | |
| Translocation | Chr10 | 19689400 | Chr4 | 27729996 | OsKitaake10g145800 |
| Translocation | Chr10 | 19689788 | Chr4 | 27729998 | OsKitaake10g145800 |