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Mutant Information

Mutant Name	FN2939-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2939-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7769282 C-T Homo INTERGENIC
SBS Chr1 39276767 G-A Hetero INTERGENIC
SBS Chr2 26266024 G-A Homo INTERGENIC
SBS Chr4 3623356 T-C Homo INTERGENIC
SBS Chr4 11653916 C-A Homo INTERGENIC
SBS Chr5 27492201 T-C Hetero INTERGENIC
SBS Chr5 28198018 G-A Hetero UTR_3_PRIME
SBS Chr6 19190967 T-C Homo INTRON
SBS Chr7 7634144 G-A Homo INTRON
SBS Chr7 20178939 C-T Hetero INTERGENIC
SBS Chr8 4474310 C-A Hetero INTERGENIC
SBS Chr8 6477749 C-T Hetero INTERGENIC
SBS Chr8 16735889 A-T Hetero INTERGENIC
SBS Chr8 24126560 G-A Hetero INTERGENIC
SBS Chr9 4705812 A-T Homo INTERGENIC
SBS Chr9 17034383 T-C Hetero INTERGENIC
SBS Chr10 8638342 T-C Homo INTERGENIC
SBS Chr10 15457882 G-A Homo INTERGENIC
SBS Chr11 515223 C-T Hetero INTRON
SBS Chr11 1345622 C-A Hetero INTERGENIC
SBS Chr11 1345624 A-G Hetero INTERGENIC
SBS Chr11 2812528 C-T Hetero UTR_5_PRIME
SBS Chr11 5246006 T-C Hetero UTR_5_PRIME
SBS Chr11 13220034 G-A Hetero INTERGENIC
SBS Chr11 13982031 C-T Hetero INTERGENIC
SBS Chr11 16709564 C-T Hetero INTRON
SBS Chr11 18997670 C-T Hetero INTERGENIC
SBS Chr11 21713375 G-A Hetero INTERGENIC
SBS Chr11 29535241 A-C Homo INTERGENIC
SBS Chr12 505466 C-T Hetero INTERGENIC
SBS Chr12 1803134 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g026900

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 599581 599583 2
Deletion Chr9 1924684 1924694 10
Deletion Chr9 2793163 2793167 4
Deletion Chr12 4326395 4326397 2
Deletion Chr5 4782850 4782862 12
Deletion Chr6 5616887 5616902 15
Deletion Chr6 11532480 11532481 1
Deletion Chr3 33820949 33820954 5
Deletion Chr3 36371796 36371798 2

Insertions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 7162958 7162961 2
Insertion Chr2 24508385 24508388 2
Insertion Chr3 22268486 22268489 2
Insertion Chr3 32383879 32383882 2
Insertion Chr4 3220553 3220557 3
Insertion Chr8 16765157 16765160 2
Insertion Chr10 3733720 3733723 2
Insertion Chr11 14104560 14104563 2
Insertion Chr1 17153501 17153503 1
Insertion Chr11 12450264 12450279 14

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 23690323 23871537 OsKitaake12g190200
Inversion Chr12 23690336 23871550 OsKitaake12g190200
Inversion Chr5 26641568 26648360 OsKitaake05g237700
Inversion Chr5 26641582 26648368 OsKitaake05g237700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7769282	C-T	Homo	INTERGENIC
SBS	Chr1	39276767	G-A	Hetero	INTERGENIC
SBS	Chr2	26266024	G-A	Homo	INTERGENIC
SBS	Chr4	3623356	T-C	Homo	INTERGENIC
SBS	Chr4	11653916	C-A	Homo	INTERGENIC
SBS	Chr5	27492201	T-C	Hetero	INTERGENIC
SBS	Chr5	28198018	G-A	Hetero	UTR_3_PRIME
SBS	Chr6	19190967	T-C	Homo	INTRON
SBS	Chr7	7634144	G-A	Homo	INTRON
SBS	Chr7	20178939	C-T	Hetero	INTERGENIC
SBS	Chr8	4474310	C-A	Hetero	INTERGENIC
SBS	Chr8	6477749	C-T	Hetero	INTERGENIC
SBS	Chr8	16735889	A-T	Hetero	INTERGENIC
SBS	Chr8	24126560	G-A	Hetero	INTERGENIC
SBS	Chr9	4705812	A-T	Homo	INTERGENIC
SBS	Chr9	17034383	T-C	Hetero	INTERGENIC
SBS	Chr10	8638342	T-C	Homo	INTERGENIC
SBS	Chr10	15457882	G-A	Homo	INTERGENIC
SBS	Chr11	515223	C-T	Hetero	INTRON
SBS	Chr11	1345622	C-A	Hetero	INTERGENIC
SBS	Chr11	1345624	A-G	Hetero	INTERGENIC
SBS	Chr11	2812528	C-T	Hetero	UTR_5_PRIME
SBS	Chr11	5246006	T-C	Hetero	UTR_5_PRIME
SBS	Chr11	13220034	G-A	Hetero	INTERGENIC
SBS	Chr11	13982031	C-T	Hetero	INTERGENIC
SBS	Chr11	16709564	C-T	Hetero	INTRON
SBS	Chr11	18997670	C-T	Hetero	INTERGENIC
SBS	Chr11	21713375	G-A	Hetero	INTERGENIC
SBS	Chr11	29535241	A-C	Homo	INTERGENIC
SBS	Chr12	505466	C-T	Hetero	INTERGENIC
SBS	Chr12	1803134	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g026900

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	599581	599583	2
Deletion	Chr9	1924684	1924694	10
Deletion	Chr9	2793163	2793167	4
Deletion	Chr12	4326395	4326397	2
Deletion	Chr5	4782850	4782862	12
Deletion	Chr6	5616887	5616902	15
Deletion	Chr6	11532480	11532481	1
Deletion	Chr3	33820949	33820954	5
Deletion	Chr3	36371796	36371798	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	23690323	23871537	OsKitaake12g190200
Inversion	Chr12	23690336	23871550	OsKitaake12g190200
Inversion	Chr5	26641568	26648360	OsKitaake05g237700
Inversion	Chr5	26641582	26648368	OsKitaake05g237700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes