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| Mutant Information |
|---|
| Mutant Name | FN2940-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2940-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 39
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 12382584 | G-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 15920023 | C-A | Homo | INTERGENIC | |
| SBS | Chr2 | 9110324 | T-C | Homo | INTERGENIC | |
| SBS | Chr2 | 9110333 | A-T | Homo | INTERGENIC | |
| SBS | Chr3 | 1631965 | C-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 8526225 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 14847340 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 17673380 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 18637348 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 22483352 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 31305442 | C-T | Homo | INTRON | |
| SBS | Chr4 | 110908 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 4374405 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 20984995 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 25967502 | A-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 32987362 | T-C | Homo | INTRON | |
| SBS | Chr5 | 12814724 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 17233193 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g132000 |
| SBS | Chr5 | 19680471 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 977021 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 8019652 | T-A | Homo | INTERGENIC | |
| SBS | Chr7 | 2629655 | A-G | Hetero | INTRON | |
| SBS | Chr7 | 12158364 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 22288925 | C-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 1085625 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 6292381 | A-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 14508100 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 17940442 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 3907507 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 21628425 | A-G | Hetero | INTRON | |
| SBS | Chr9 | 21628426 | A-G | Hetero | INTRON | |
| SBS | Chr10 | 3776179 | A-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 19079634 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 25967526 | T-C | Hetero | INTRON | |
| SBS | Chr12 | 11110402 | A-T | Homo | INTERGENIC | |
| SBS | Chr12 | 11491206 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 14000610 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 17604603 | A-T | Homo | INTERGENIC | |
| SBS | Chr12 | 23592079 | G-A | Homo | INTERGENIC |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 5268166 | 5268167 | 1 | |
| Deletion | Chr1 | 6264677 | 6264678 | 1 | |
| Deletion | Chr7 | 6676375 | 6676376 | 1 | |
| Deletion | Chr9 | 9528407 | 9528408 | 1 | |
| Deletion | Chr1 | 12349627 | 12349629 | 2 | |
| Deletion | Chr12 | 17528001 | 17587000 | 58999 | 3 |
| Deletion | Chr2 | 18109305 | 18109309 | 4 | |
| Deletion | Chr5 | 20319327 | 20319339 | 12 | |
| Deletion | Chr2 | 25640001 | 25649000 | 8999 | OsKitaake02g253500 |
| Deletion | Chr1 | 32551172 | 32551173 | 1 |
Insertions: 8
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 13129768 | 13151284 | |
| Inversion | Chr5 | 17869355 | 18180215 | OsKitaake05g138400 |
| Inversion | Chr5 | 17869369 | 18180289 | OsKitaake05g138400 |
| Inversion | Chr11 | 24108348 | 24108709 |
Translocations: 6
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 6157384 | Chr3 | 3750280 | OsKitaake03g052600 |
| Translocation | Chr8 | 6158124 | Chr3 | 3750271 | OsKitaake03g052600 |
| Translocation | Chr5 | 12252861 | Chr1 | 41296571 | |
| Translocation | Chr5 | 12253187 | Chr1 | 27949764 | |
| Translocation | Chr11 | 24108335 | Chr4 | 25515206 | OsKitaake04g175550 |
| Translocation | Chr11 | 24111405 | Chr4 | 25519775 |