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| Mutant Information |
|---|
| Mutant Name | FN2942-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2942-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 21386702 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 28873912 | C-A | Homo | INTRON | |
| SBS | Chr2 | 12462967 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 26405404 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 27967924 | C-T | Hetero | INTRON | |
| SBS | Chr3 | 226023 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 36641386 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 14533311 | A-C | Homo | INTERGENIC | |
| SBS | Chr4 | 27854232 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 28952397 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g218000 |
| SBS | Chr4 | 29805662 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 35614136 | C-A | Homo | INTERGENIC | |
| SBS | Chr5 | 1833418 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 6408062 | A-G | Hetero | UTR_5_PRIME | |
| SBS | Chr6 | 9325654 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 13993608 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 146521 | A-T | Hetero | UTR_5_PRIME | |
| SBS | Chr7 | 9961518 | T-A | Hetero | INTRON | |
| SBS | Chr7 | 10528427 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 11194405 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 22408904 | T-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 85287 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 24000949 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 16301980 | C-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 18241063 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 23586490 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 24175343 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 5743066 | T-C | Homo | INTRON | |
| SBS | Chr12 | 10625024 | G-T | Homo | INTERGENIC | |
| SBS | Chr12 | 11134910 | A-C | Homo | INTERGENIC | |
| SBS | Chr12 | 20609365 | G-C | Hetero | INTERGENIC |
Deletions: 17
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 809653 | 809655 | 2 | |
| Deletion | Chr8 | 1897613 | 1897620 | 7 | OsKitaake08g022100 |
| Deletion | Chr2 | 2869735 | 2869736 | 1 | OsKitaake02g041100 |
| Deletion | Chr6 | 3821859 | 3821865 | 6 | |
| Deletion | Chr6 | 5204113 | 5204121 | 8 | |
| Deletion | Chr8 | 6361702 | 6361703 | 1 | |
| Deletion | Chr4 | 7340105 | 7340106 | 1 | |
| Deletion | Chr6 | 8616523 | 8616524 | 1 | OsKitaake06g106200 |
| Deletion | Chr2 | 17753001 | 17813000 | 59999 | 6 |
| Deletion | Chr5 | 19655636 | 19655641 | 5 | |
| Deletion | Chr3 | 20046701 | 20046856 | 155 | |
| Deletion | Chr12 | 20639927 | 20639931 | 4 | |
| Deletion | Chr7 | 22588681 | 22588749 | 68 | |
| Deletion | Chr2 | 30166542 | 30166549 | 7 | |
| Deletion | Chr1 | 31098508 | 31098521 | 13 | OsKitaake01g310200 |
| Deletion | Chr2 | 35751012 | 35751016 | 4 | |
| Deletion | Chr1 | 38738346 | 38738396 | 50 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 32299490 | 32299493 | 2 | |
| Insertion | Chr5 | 29899713 | 29899717 | 3 | |
| Insertion | Chr1 | 6413509 | 6413512 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 17756659 | 18265587 | |
| Inversion | Chr2 | 17811193 | 18265594 |