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Mutant Information

Mutant Name	FN2944-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2944-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8041836 A-T Hetero INTERGENIC
SBS Chr1 8230520 T-A Hetero INTERGENIC
SBS Chr1 21309446 C-G Hetero INTERGENIC
SBS Chr1 43524012 G-A Homo INTRON
SBS Chr2 201768 C-T Hetero INTRON
SBS Chr2 11081876 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g129500
SBS Chr2 14559190 G-A Hetero INTERGENIC
SBS Chr2 21156972 T-C Hetero UTR_3_PRIME
SBS Chr2 26628880 G-A Hetero UTR_3_PRIME
SBS Chr2 30083359 T-C Homo INTRON
SBS Chr3 19323900 T-C Hetero INTERGENIC
SBS Chr3 19610347 G-A Homo INTERGENIC
SBS Chr3 22499030 C-G Homo INTERGENIC
SBS Chr4 5514133 T-A Hetero INTERGENIC
SBS Chr4 12144184 T-C Hetero INTERGENIC
SBS Chr4 24818289 T-C Hetero INTERGENIC
SBS Chr5 5059844 C-T Hetero INTERGENIC
SBS Chr5 6813814 G-A Hetero INTERGENIC
SBS Chr5 27884658 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake05g256300
SBS Chr6 3923748 A-G Hetero INTRON
SBS Chr6 3923759 T-A Hetero INTRON
SBS Chr6 10382309 C-A Hetero INTERGENIC
SBS Chr6 20735097 G-C Hetero INTERGENIC
SBS Chr6 23722865 T-A Hetero INTERGENIC
SBS Chr6 23778787 C-T Homo SYNONYMOUS_CODING
SBS Chr7 10555166 A-T Hetero INTERGENIC
SBS Chr7 12238152 T-A Hetero INTERGENIC
SBS Chr7 17881768 G-C Hetero INTERGENIC
SBS Chr7 22612321 G-A Hetero INTERGENIC
SBS Chr8 7738229 T-C Homo INTERGENIC
SBS Chr9 18535604 C-T Hetero INTERGENIC
SBS Chr11 2695121 G-A Homo INTERGENIC
SBS Chr11 6479155 A-C Hetero INTERGENIC
SBS Chr12 2008811 C-T Homo INTRON
SBS Chr12 3988029 C-T Hetero INTERGENIC
SBS Chr12 12324666 G-A Homo INTERGENIC
SBS Chr12 13839519 C-T Homo INTERGENIC
SBS Chr12 15051181 G-T Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 990766 990767 1
Deletion Chr9 4761459 4761461 2
Deletion Chr1 5883671 5883673 2
Deletion Chr4 6041001 6083000 41999 OsKitaake04g030300
Deletion Chr10 8269928 8269930 2
Deletion Chr4 10507868 10507870 2
Deletion Chr3 12390345 12390362 17
Deletion Chr3 12463266 12463268 2
Deletion Chr7 12943234 12943238 4 OsKitaake07g114500
Deletion Chr9 14735178 14735182 4
Deletion Chr8 15808673 15808678 5
Deletion Chr9 17893020 17893021 1
Deletion Chr10 19096629 19096630 1
Deletion Chr7 23065166 23065170 4
Deletion Chr4 26934001 26963000 28999 6
Deletion Chr2 29152097 29152099 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 8251469 8251472 2
Insertion Chr7 24265846 24265849 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 6044996 6814486
Inversion Chr4 27737312 27897976
Inversion Chr4 27787803 27897971

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 5343610 Chr4 6126241
Translocation Chr8 5343612 Chr4 6126490

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8041836	A-T	Hetero	INTERGENIC
SBS	Chr1	8230520	T-A	Hetero	INTERGENIC
SBS	Chr1	21309446	C-G	Hetero	INTERGENIC
SBS	Chr1	43524012	G-A	Homo	INTRON
SBS	Chr2	201768	C-T	Hetero	INTRON
SBS	Chr2	11081876	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g129500
SBS	Chr2	14559190	G-A	Hetero	INTERGENIC
SBS	Chr2	21156972	T-C	Hetero	UTR_3_PRIME
SBS	Chr2	26628880	G-A	Hetero	UTR_3_PRIME
SBS	Chr2	30083359	T-C	Homo	INTRON
SBS	Chr3	19323900	T-C	Hetero	INTERGENIC
SBS	Chr3	19610347	G-A	Homo	INTERGENIC
SBS	Chr3	22499030	C-G	Homo	INTERGENIC
SBS	Chr4	5514133	T-A	Hetero	INTERGENIC
SBS	Chr4	12144184	T-C	Hetero	INTERGENIC
SBS	Chr4	24818289	T-C	Hetero	INTERGENIC
SBS	Chr5	5059844	C-T	Hetero	INTERGENIC
SBS	Chr5	6813814	G-A	Hetero	INTERGENIC
SBS	Chr5	27884658	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g256300
SBS	Chr6	3923748	A-G	Hetero	INTRON
SBS	Chr6	3923759	T-A	Hetero	INTRON
SBS	Chr6	10382309	C-A	Hetero	INTERGENIC
SBS	Chr6	20735097	G-C	Hetero	INTERGENIC
SBS	Chr6	23722865	T-A	Hetero	INTERGENIC
SBS	Chr6	23778787	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr7	10555166	A-T	Hetero	INTERGENIC
SBS	Chr7	12238152	T-A	Hetero	INTERGENIC
SBS	Chr7	17881768	G-C	Hetero	INTERGENIC
SBS	Chr7	22612321	G-A	Hetero	INTERGENIC
SBS	Chr8	7738229	T-C	Homo	INTERGENIC
SBS	Chr9	18535604	C-T	Hetero	INTERGENIC
SBS	Chr11	2695121	G-A	Homo	INTERGENIC
SBS	Chr11	6479155	A-C	Hetero	INTERGENIC
SBS	Chr12	2008811	C-T	Homo	INTRON
SBS	Chr12	3988029	C-T	Hetero	INTERGENIC
SBS	Chr12	12324666	G-A	Homo	INTERGENIC
SBS	Chr12	13839519	C-T	Homo	INTERGENIC
SBS	Chr12	15051181	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	990766	990767	1
Deletion	Chr9	4761459	4761461	2
Deletion	Chr1	5883671	5883673	2
Deletion	Chr4	6041001	6083000	41999	OsKitaake04g030300
Deletion	Chr10	8269928	8269930	2
Deletion	Chr4	10507868	10507870	2
Deletion	Chr3	12390345	12390362	17
Deletion	Chr3	12463266	12463268	2
Deletion	Chr7	12943234	12943238	4	OsKitaake07g114500
Deletion	Chr9	14735178	14735182	4
Deletion	Chr8	15808673	15808678	5
Deletion	Chr9	17893020	17893021	1
Deletion	Chr10	19096629	19096630	1
Deletion	Chr7	23065166	23065170	4
Deletion	Chr4	26934001	26963000	28999	6
Deletion	Chr2	29152097	29152099	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	6044996	6814486
Inversion	Chr4	27737312	27897976
Inversion	Chr4	27787803	27897971

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes