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| Mutant Information |
|---|
| Mutant Name | FN2947-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2947-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 3833954 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 74839 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 20823359 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 31050661 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 32948747 | T-C | Homo | UTR_3_PRIME | |
| SBS | Chr2 | 33945244 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g351800 |
| SBS | Chr2 | 35697894 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 8169991 | A-T | Homo | INTRON | |
| SBS | Chr3 | 11778040 | A-G | Homo | INTRON | |
| SBS | Chr3 | 12789750 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 8207282 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 22041336 | A-C | Homo | INTERGENIC | |
| SBS | Chr4 | 26683364 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 34901981 | G-A | Homo | INTRON | |
| SBS | Chr5 | 20969432 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 22414005 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 24376808 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 1486235 | G-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr7 | 16359170 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 18939804 | T-C | Homo | INTERGENIC | |
| SBS | Chr7 | 27233879 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 10279673 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 10840159 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 11191951 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 18937057 | G-A | Hetero | STOP_GAINED | OsKitaake09g151200 |
| SBS | Chr11 | 12295590 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 14900689 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 18437503 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 24709856 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 26255968 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 255923 | T-A | Homo | INTERGENIC | |
| SBS | Chr12 | 13738151 | G-C | Homo | INTERGENIC |
Deletions: 19
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 2853190 | 2853200 | 10 | |
| Deletion | Chr2 | 4157526 | 4157530 | 4 | OsKitaake02g058600 |
| Deletion | Chr12 | 6091819 | 6091824 | 5 | |
| Deletion | Chr5 | 12393707 | 12393708 | 1 | |
| Deletion | Chr12 | 13734784 | 13734786 | 2 | |
| Deletion | Chr7 | 15768377 | 15768378 | 1 | |
| Deletion | Chr1 | 16723968 | 16723986 | 18 | |
| Deletion | Chr5 | 17169850 | 17169854 | 4 | |
| Deletion | Chr7 | 18019382 | 18019384 | 2 | |
| Deletion | Chr7 | 19422748 | 19422759 | 11 | |
| Deletion | Chr7 | 20401220 | 20401224 | 4 | |
| Deletion | Chr3 | 20429895 | 20429906 | 11 | |
| Deletion | Chr10 | 22584619 | 22584630 | 11 | |
| Deletion | Chr4 | 23801515 | 23801524 | 9 | |
| Deletion | Chr8 | 26413880 | 26414025 | 145 | |
| Deletion | Chr4 | 27338085 | 27338086 | 1 | |
| Deletion | Chr1 | 30015235 | 30015236 | 1 | |
| Deletion | Chr1 | 31250631 | 31250645 | 14 | OsKitaake01g312700 |
| Deletion | Chr3 | 32436234 | 32436258 | 24 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 27872271 | 27872273 | 1 | |
| Insertion | Chr8 | 11486230 | 11486234 | 3 | |
| Insertion | Chr3 | 6885482 | 6885485 | 2 | OsKitaake03g097400  |
Inversions: 8
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 16518675 | 16996429 | |
| Inversion | Chr8 | 16518682 | 16996430 | |
| Inversion | Chr3 | 27178900 | 27276784 | OsKitaake03g280900 |
| Inversion | Chr3 | 27178904 | 27276783 | OsKitaake03g280900 |
| Inversion | Chr3 | 27548942 | 28285285 | OsKitaake03g292500 |
| Inversion | Chr3 | 27548952 | 28285297 | OsKitaake03g292500 |
| Inversion | Chr2 | 32508930 | 32674384 | OsKitaake02g334600 |
| Inversion | Chr2 | 32508940 | 32674491 | OsKitaake02g334600 |