Search Kitaake

Mutant Information

Mutant Name	FN2951-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2951-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3522826 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g046900
SBS Chr1 6035524 C-A Hetero INTRON
SBS Chr1 8375142 C-T Hetero INTERGENIC
SBS Chr1 8375143 A-T Hetero INTERGENIC
SBS Chr1 25620654 C-T Homo INTERGENIC
SBS Chr2 6785791 C-T Hetero INTERGENIC
SBS Chr2 15766593 G-A Hetero INTERGENIC
SBS Chr2 16051586 G-A Hetero INTRON
SBS Chr2 18541405 G-A Homo INTERGENIC
SBS Chr2 27825502 G-A Hetero INTERGENIC
SBS Chr2 36495770 G-T Hetero UTR_5_PRIME
SBS Chr2 36495772 G-T Hetero START_GAINED
SBS Chr3 30269015 G-A Homo INTERGENIC
SBS Chr4 345371 A-G Homo NON_SYNONYMOUS_CODING OsKitaake04g002000
SBS Chr4 12369372 T-C Hetero INTERGENIC
SBS Chr4 19393202 C-T Hetero INTERGENIC
SBS Chr6 7503608 T-C Hetero INTERGENIC
SBS Chr6 14313318 G-T Hetero INTERGENIC
SBS Chr6 23968854 C-A Hetero UTR_3_PRIME
SBS Chr6 25868761 A-G Hetero UTR_5_PRIME
SBS Chr7 7765173 G-A Hetero INTERGENIC
SBS Chr7 11043337 G-T Hetero INTERGENIC
SBS Chr7 14596756 C-G Hetero INTERGENIC
SBS Chr8 8682226 C-T Hetero INTERGENIC
SBS Chr10 3264317 G-T Hetero INTERGENIC
SBS Chr10 4259577 T-C Hetero INTERGENIC
SBS Chr10 7070706 G-A Hetero INTERGENIC
SBS Chr10 13165178 A-G Hetero INTERGENIC
SBS Chr10 23157884 C-A Hetero INTRON
SBS Chr10 23157885 T-A Hetero INTRON
SBS Chr11 9079536 G-A Homo INTERGENIC
SBS Chr11 13121049 C-T Homo INTERGENIC
SBS Chr12 16283512 C-G Hetero INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 298822 298831 9
Deletion Chr7 1273649 1273664 15 OsKitaake07g018500
Deletion Chr7 6202532 6202538 6
Deletion Chr1 6484920 6484924 4 OsKitaake01g081900
Deletion Chr5 6960706 6960708 2
Deletion Chr6 7169884 7169886 2
Deletion Chr1 8302940 8302942 2
Deletion Chr5 9125361 9125370 9
Deletion Chr3 11563550 11563551 1
Deletion Chr11 15924532 15924540 8
Deletion Chr4 20869496 20869500 4 OsKitaake04g113700
Deletion Chr10 23911361 23911366 5
Deletion Chr7 24200124 24200134 10
Deletion Chr3 24700561 24700562 1
Deletion Chr4 24868089 24868095 6
Deletion Chr6 26066378 26066379 1 OsKitaake06g232800
Deletion Chr12 26269980 26269990 10
Deletion Chr4 27312969 27312975 6
Deletion Chr5 27748569 27748577 8
Deletion Chr6 28008749 28008751 2
Deletion Chr4 29327275 29327276 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 10975182 10975185 2
Insertion Chr2 7860076 7860078 1
Insertion Chr6 29801763 29801766 2
Insertion Chr8 27722443 27722447 3
Insertion Chr11 12011508 12011512 3
Insertion Chr1 25385548 25385551 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 3974305 4033833
Inversion Chr3 3974322 4033836
Inversion Chr1 12547661 12695089 2
Inversion Chr3 26092364 26897407
Inversion Chr3 26874203 26897404

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 100843 Chr6 28190265 OsKitaake06g256800
Translocation Chr12 100886 Chr10 23157447 OsKitaake10g195250
Translocation Chr7 10734824 Chr6 23993568 OsKitaake07g102200
Translocation Chr10 23158675 Chr6 28190295 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3522826	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g046900
SBS	Chr1	6035524	C-A	Hetero	INTRON
SBS	Chr1	8375142	C-T	Hetero	INTERGENIC
SBS	Chr1	8375143	A-T	Hetero	INTERGENIC
SBS	Chr1	25620654	C-T	Homo	INTERGENIC
SBS	Chr2	6785791	C-T	Hetero	INTERGENIC
SBS	Chr2	15766593	G-A	Hetero	INTERGENIC
SBS	Chr2	16051586	G-A	Hetero	INTRON
SBS	Chr2	18541405	G-A	Homo	INTERGENIC
SBS	Chr2	27825502	G-A	Hetero	INTERGENIC
SBS	Chr2	36495770	G-T	Hetero	UTR_5_PRIME
SBS	Chr2	36495772	G-T	Hetero	START_GAINED
SBS	Chr3	30269015	G-A	Homo	INTERGENIC
SBS	Chr4	345371	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g002000
SBS	Chr4	12369372	T-C	Hetero	INTERGENIC
SBS	Chr4	19393202	C-T	Hetero	INTERGENIC
SBS	Chr6	7503608	T-C	Hetero	INTERGENIC
SBS	Chr6	14313318	G-T	Hetero	INTERGENIC
SBS	Chr6	23968854	C-A	Hetero	UTR_3_PRIME
SBS	Chr6	25868761	A-G	Hetero	UTR_5_PRIME
SBS	Chr7	7765173	G-A	Hetero	INTERGENIC
SBS	Chr7	11043337	G-T	Hetero	INTERGENIC
SBS	Chr7	14596756	C-G	Hetero	INTERGENIC
SBS	Chr8	8682226	C-T	Hetero	INTERGENIC
SBS	Chr10	3264317	G-T	Hetero	INTERGENIC
SBS	Chr10	4259577	T-C	Hetero	INTERGENIC
SBS	Chr10	7070706	G-A	Hetero	INTERGENIC
SBS	Chr10	13165178	A-G	Hetero	INTERGENIC
SBS	Chr10	23157884	C-A	Hetero	INTRON
SBS	Chr10	23157885	T-A	Hetero	INTRON
SBS	Chr11	9079536	G-A	Homo	INTERGENIC
SBS	Chr11	13121049	C-T	Homo	INTERGENIC
SBS	Chr12	16283512	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	298822	298831	9
Deletion	Chr7	1273649	1273664	15	OsKitaake07g018500
Deletion	Chr7	6202532	6202538	6
Deletion	Chr1	6484920	6484924	4	OsKitaake01g081900
Deletion	Chr5	6960706	6960708	2
Deletion	Chr6	7169884	7169886	2
Deletion	Chr1	8302940	8302942	2
Deletion	Chr5	9125361	9125370	9
Deletion	Chr3	11563550	11563551	1
Deletion	Chr11	15924532	15924540	8
Deletion	Chr4	20869496	20869500	4	OsKitaake04g113700
Deletion	Chr10	23911361	23911366	5
Deletion	Chr7	24200124	24200134	10
Deletion	Chr3	24700561	24700562	1
Deletion	Chr4	24868089	24868095	6
Deletion	Chr6	26066378	26066379	1	OsKitaake06g232800
Deletion	Chr12	26269980	26269990	10
Deletion	Chr4	27312969	27312975	6
Deletion	Chr5	27748569	27748577	8
Deletion	Chr6	28008749	28008751	2
Deletion	Chr4	29327275	29327276	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	3974305	4033833
Inversion	Chr3	3974322	4033836
Inversion	Chr1	12547661	12695089	2
Inversion	Chr3	26092364	26897407
Inversion	Chr3	26874203	26897404

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes