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Mutant Information

Mutant Name	FN2953-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2953-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4443904 T-C Hetero INTRON
SBS Chr1 10047719 C-A Homo UTR_3_PRIME
SBS Chr1 19096099 C-T Hetero INTERGENIC
SBS Chr1 42012780 G-T Hetero INTRON
SBS Chr2 22607839 C-T Homo INTERGENIC
SBS Chr2 22822970 T-C Homo NON_SYNONYMOUS_CODING OsKitaake02g222000
SBS Chr2 31230975 C-T Homo INTERGENIC
SBS Chr2 33236928 A-T Homo INTRON
SBS Chr3 24844650 A-T Hetero INTERGENIC
SBS Chr3 31084948 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g326400
SBS Chr4 4261440 G-A Hetero INTERGENIC
SBS Chr4 14621431 G-T Hetero INTRON
SBS Chr4 20699783 A-T Hetero UTR_3_PRIME
SBS Chr4 27159545 C-T Hetero INTERGENIC
SBS Chr6 10593331 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake06g119100
SBS Chr6 15481199 C-T Hetero INTERGENIC
SBS Chr7 12249195 T-C Homo INTERGENIC
SBS Chr8 13242069 G-C Hetero INTERGENIC
SBS Chr9 8080811 C-T Hetero INTERGENIC
SBS Chr9 8169996 C-T Homo INTERGENIC
SBS Chr10 22844377 G-C Homo INTRON
SBS Chr11 8638068 G-A Hetero INTERGENIC
SBS Chr11 8995577 T-A Hetero INTERGENIC
SBS Chr11 19864331 G-T Hetero INTERGENIC
SBS Chr11 19864332 C-T Hetero INTERGENIC
SBS Chr11 20764109 A-G Hetero INTERGENIC
SBS Chr11 21986372 C-A Hetero INTERGENIC
SBS Chr12 10805396 C-T Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 7247812 7247813 1
Deletion Chr2 7731001 7923000 191999 15
Deletion Chr10 8706655 8706656 1
Deletion Chr12 8721240 8721241 1
Deletion Chr12 11210001 11229000 18999
Deletion Chr11 19869001 20269000 399999 27
Deletion Chr11 20773001 20867000 93999 12
Deletion Chr11 23516001 23603000 86999 5
Deletion Chr8 25420001 25439000 18999 3
Deletion Chr8 25445001 25489000 43999 8
Deletion Chr1 32740115 32740117 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 33933 33935 1
Insertion Chr5 9695636 9695638 1 OsKitaake05g088800
Insertion Chr10 5735714 5735716 1
Insertion Chr12 11206964 11206968 3

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 19029175 19820050
Inversion Chr11 20772641 21195437

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 19820064 Chr6 1591124 OsKitaake06g019000
Translocation Chr7 19820214 Chr6 1591123 OsKitaake06g019000
Translocation Chr8 25486687 Chr7 19820235 OsKitaake08g200300
Translocation Chr3 33319772 Chr2 5625950 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4443904	T-C	Hetero	INTRON
SBS	Chr1	10047719	C-A	Homo	UTR_3_PRIME
SBS	Chr1	19096099	C-T	Hetero	INTERGENIC
SBS	Chr1	42012780	G-T	Hetero	INTRON
SBS	Chr2	22607839	C-T	Homo	INTERGENIC
SBS	Chr2	22822970	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g222000
SBS	Chr2	31230975	C-T	Homo	INTERGENIC
SBS	Chr2	33236928	A-T	Homo	INTRON
SBS	Chr3	24844650	A-T	Hetero	INTERGENIC
SBS	Chr3	31084948	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g326400
SBS	Chr4	4261440	G-A	Hetero	INTERGENIC
SBS	Chr4	14621431	G-T	Hetero	INTRON
SBS	Chr4	20699783	A-T	Hetero	UTR_3_PRIME
SBS	Chr4	27159545	C-T	Hetero	INTERGENIC
SBS	Chr6	10593331	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g119100
SBS	Chr6	15481199	C-T	Hetero	INTERGENIC
SBS	Chr7	12249195	T-C	Homo	INTERGENIC
SBS	Chr8	13242069	G-C	Hetero	INTERGENIC
SBS	Chr9	8080811	C-T	Hetero	INTERGENIC
SBS	Chr9	8169996	C-T	Homo	INTERGENIC
SBS	Chr10	22844377	G-C	Homo	INTRON
SBS	Chr11	8638068	G-A	Hetero	INTERGENIC
SBS	Chr11	8995577	T-A	Hetero	INTERGENIC
SBS	Chr11	19864331	G-T	Hetero	INTERGENIC
SBS	Chr11	19864332	C-T	Hetero	INTERGENIC
SBS	Chr11	20764109	A-G	Hetero	INTERGENIC
SBS	Chr11	21986372	C-A	Hetero	INTERGENIC
SBS	Chr12	10805396	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	7247812	7247813	1
Deletion	Chr2	7731001	7923000	191999	15
Deletion	Chr10	8706655	8706656	1
Deletion	Chr12	8721240	8721241	1
Deletion	Chr12	11210001	11229000	18999
Deletion	Chr11	19869001	20269000	399999	27
Deletion	Chr11	20773001	20867000	93999	12
Deletion	Chr11	23516001	23603000	86999	5
Deletion	Chr8	25420001	25439000	18999	3
Deletion	Chr8	25445001	25489000	43999	8
Deletion	Chr1	32740115	32740117	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	19029175	19820050
Inversion	Chr11	20772641	21195437

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes