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| Mutant Information |
|---|
| Mutant Name | FN2958-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2958-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 5779376 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 14448775 | G-A | Homo | INTRON | |
| SBS | Chr1 | 14699924 | G-T | Homo | INTERGENIC | |
| SBS | Chr1 | 25291045 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 28257678 | C-G | Homo | INTERGENIC | |
| SBS | Chr1 | 44168616 | A-T | Homo | INTERGENIC | |
| SBS | Chr2 | 499155 | C-A | Homo | INTERGENIC | |
| SBS | Chr2 | 6885490 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 20831828 | G-T | Homo | INTERGENIC | |
| SBS | Chr2 | 20831829 | A-T | Homo | INTERGENIC | |
| SBS | Chr2 | 23388831 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 25606339 | A-G | Hetero | INTRON | |
| SBS | Chr2 | 33954983 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 2714932 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 15990965 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 20476881 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 24893509 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 28026671 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 14032043 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 28063329 | G-T | Homo | INTRON | |
| SBS | Chr8 | 742318 | C-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 12852808 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 20805623 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 20805626 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 28207865 | A-G | Homo | INTERGENIC | |
| SBS | Chr9 | 2224266 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 7843544 | G-A | Homo | START_GAINED | |
| SBS | Chr11 | 18362121 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 19968400 | T-A | Homo | INTERGENIC | |
| SBS | Chr12 | 7902292 | G-A | Homo | INTERGENIC |
Deletions: 16
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 4129474 | 4129482 | 8 | |
| Deletion | Chr7 | 5430679 | 5430682 | 3 | |
| Deletion | Chr11 | 7997001 | 8010000 | 12999 | |
| Deletion | Chr2 | 9553988 | 9553990 | 2 | |
| Deletion | Chr11 | 11152001 | 11178000 | 25999 | OsKitaake11g107200 |
| Deletion | Chr4 | 11275001 | 11302000 | 26999 | |
| Deletion | Chr7 | 11929001 | 11960000 | 30999 | |
| Deletion | Chr12 | 13808001 | 13825000 | 16999 | |
| Deletion | Chr7 | 16253090 | 16253098 | 8 | |
| Deletion | Chr5 | 18584590 | 18584596 | 6 | |
| Deletion | Chr10 | 19286560 | 19286564 | 4 | OsKitaake10g139300 |
| Deletion | Chr7 | 26107701 | 26107702 | 1 | |
| Deletion | Chr6 | 28736868 | 28736871 | 3 | |
| Deletion | Chr7 | 29334936 | 29334951 | 15 | |
| Deletion | Chr4 | 34438908 | 34438919 | 11 | |
| Deletion | Chr4 | 34780651 | 34780652 | 1 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 18946514 | 18946517 | 2 | |
| Insertion | Chr6 | 16712484 | 16712487 | 2 | |
| Insertion | Chr8 | 16521293 | 16521296 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 31302804 | 31306878 | OsKitaake02g321100 |
| Inversion | Chr2 | 31302810 | 31306883 | OsKitaake02g321100 |