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Mutant Information

Mutant Name	FN2967-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2967-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10247778 G-A Homo INTERGENIC
SBS Chr1 21474093 G-A Hetero INTERGENIC
SBS Chr1 37791589 C-A Hetero INTERGENIC
SBS Chr2 9783022 T-C Homo INTERGENIC
SBS Chr2 20172328 A-T Hetero INTERGENIC
SBS Chr3 22750219 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g246100
SBS Chr3 24197840 C-T Hetero INTERGENIC
SBS Chr3 24938572 A-T Hetero INTERGENIC
SBS Chr3 24938576 T-G Hetero INTERGENIC
SBS Chr3 26782167 C-A Hetero INTERGENIC
SBS Chr3 35376842 G-A Hetero INTERGENIC
SBS Chr3 35376843 T-A Hetero INTERGENIC
SBS Chr4 13394150 A-G Hetero INTERGENIC
SBS Chr4 28721115 G-A Homo INTERGENIC
SBS Chr5 3926918 A-T Homo INTRON
SBS Chr5 11315241 C-T Hetero INTERGENIC
SBS Chr6 17930492 A-G Hetero INTERGENIC
SBS Chr6 23046142 C-G Homo SYNONYMOUS_CODING
SBS Chr7 6413220 T-A Hetero INTERGENIC
SBS Chr7 18971547 A-T Homo INTERGENIC
SBS Chr7 26414209 T-A Homo INTERGENIC
SBS Chr8 6630084 C-T Hetero INTERGENIC
SBS Chr8 21641518 T-C Homo INTERGENIC
SBS Chr8 28911360 C-A Hetero INTERGENIC
SBS Chr10 2967678 G-A Hetero INTERGENIC
SBS Chr11 7733266 T-A Homo INTERGENIC
SBS Chr11 18020908 G-A Hetero INTERGENIC
SBS Chr11 23264544 G-T Homo INTERGENIC
SBS Chr11 23488856 G-A Homo INTERGENIC
SBS Chr11 25822131 C-T Homo INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 6409467 6409468 1
Deletion Chr11 7121885 7121905 20
Deletion Chr2 9783759 9783762 3
Deletion Chr10 10389001 10401000 11999 OsKitaake10g060400
Deletion Chr8 10643568 10643588 20
Deletion Chr5 11926131 11926133 2
Deletion Chr11 12939001 12990000 50999
Deletion Chr9 13002336 13002342 6
Deletion Chr4 13329875 13329877 2
Deletion Chr1 14784200 14784205 5
Deletion Chr1 14789272 14789277 5
Deletion Chr2 16168001 16208000 39999 OsKitaake02g166800
Deletion Chr6 20632391 20632393 2
Deletion Chr6 22360139 22360147 8
Deletion Chr7 26414130 26414153 23
Deletion Chr4 30434801 30434806 5
Deletion Chr3 31592596 31592597 1
Deletion Chr4 34056689 34056695 6 OsKitaake04g284700

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 4607924 4607927 2
Insertion Chr4 22780912 22780922 9
Insertion Chr12 575285 575293 7
Insertion Chr12 7999508 7999511 2
Insertion Chr9 14214754 14214757 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 10248384 10646323

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 21863971 Chr4 20746219

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10247778	G-A	Homo	INTERGENIC
SBS	Chr1	21474093	G-A	Hetero	INTERGENIC
SBS	Chr1	37791589	C-A	Hetero	INTERGENIC
SBS	Chr2	9783022	T-C	Homo	INTERGENIC
SBS	Chr2	20172328	A-T	Hetero	INTERGENIC
SBS	Chr3	22750219	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g246100
SBS	Chr3	24197840	C-T	Hetero	INTERGENIC
SBS	Chr3	24938572	A-T	Hetero	INTERGENIC
SBS	Chr3	24938576	T-G	Hetero	INTERGENIC
SBS	Chr3	26782167	C-A	Hetero	INTERGENIC
SBS	Chr3	35376842	G-A	Hetero	INTERGENIC
SBS	Chr3	35376843	T-A	Hetero	INTERGENIC
SBS	Chr4	13394150	A-G	Hetero	INTERGENIC
SBS	Chr4	28721115	G-A	Homo	INTERGENIC
SBS	Chr5	3926918	A-T	Homo	INTRON
SBS	Chr5	11315241	C-T	Hetero	INTERGENIC
SBS	Chr6	17930492	A-G	Hetero	INTERGENIC
SBS	Chr6	23046142	C-G	Homo	SYNONYMOUS_CODING
SBS	Chr7	6413220	T-A	Hetero	INTERGENIC
SBS	Chr7	18971547	A-T	Homo	INTERGENIC
SBS	Chr7	26414209	T-A	Homo	INTERGENIC
SBS	Chr8	6630084	C-T	Hetero	INTERGENIC
SBS	Chr8	21641518	T-C	Homo	INTERGENIC
SBS	Chr8	28911360	C-A	Hetero	INTERGENIC
SBS	Chr10	2967678	G-A	Hetero	INTERGENIC
SBS	Chr11	7733266	T-A	Homo	INTERGENIC
SBS	Chr11	18020908	G-A	Hetero	INTERGENIC
SBS	Chr11	23264544	G-T	Homo	INTERGENIC
SBS	Chr11	23488856	G-A	Homo	INTERGENIC
SBS	Chr11	25822131	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	6409467	6409468	1
Deletion	Chr11	7121885	7121905	20
Deletion	Chr2	9783759	9783762	3
Deletion	Chr10	10389001	10401000	11999	OsKitaake10g060400
Deletion	Chr8	10643568	10643588	20
Deletion	Chr5	11926131	11926133	2
Deletion	Chr11	12939001	12990000	50999
Deletion	Chr9	13002336	13002342	6
Deletion	Chr4	13329875	13329877	2
Deletion	Chr1	14784200	14784205	5
Deletion	Chr1	14789272	14789277	5
Deletion	Chr2	16168001	16208000	39999	OsKitaake02g166800
Deletion	Chr6	20632391	20632393	2
Deletion	Chr6	22360139	22360147	8
Deletion	Chr7	26414130	26414153	23
Deletion	Chr4	30434801	30434806	5
Deletion	Chr3	31592596	31592597	1
Deletion	Chr4	34056689	34056695	6	OsKitaake04g284700

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	10248384	10646323

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes