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Mutant Information

Mutant Name	FN2968-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2968-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2489515 G-A Hetero INTERGENIC
SBS Chr1 2489516 C-A Hetero INTERGENIC
SBS Chr1 11184526 C-T Homo INTERGENIC
SBS Chr2 18451757 C-T Hetero SYNONYMOUS_CODING
SBS Chr2 18451758 C-T Hetero STOP_GAINED OsKitaake02g182900
SBS Chr2 19034426 G-A Hetero INTERGENIC
SBS Chr2 20025776 A-T Hetero UTR_5_PRIME
SBS Chr2 20430338 T-G Hetero INTERGENIC
SBS Chr2 21605013 C-T Hetero INTERGENIC
SBS Chr3 7675126 T-G Homo NON_SYNONYMOUS_CODING OsKitaake03g106400
SBS Chr3 13608930 A-G Homo INTERGENIC
SBS Chr3 17944496 G-A Homo INTERGENIC
SBS Chr3 20779534 C-T Homo INTERGENIC
SBS Chr3 20779535 A-T Homo INTERGENIC
SBS Chr3 29573344 C-T Homo INTRON
SBS Chr3 37218759 C-T Hetero INTRON
SBS Chr4 9659827 T-A Hetero INTERGENIC
SBS Chr4 20141022 T-C Hetero INTERGENIC
SBS Chr5 23004689 C-T Hetero INTERGENIC
SBS Chr6 18546243 G-A Hetero INTERGENIC
SBS Chr7 201019 A-G Hetero INTERGENIC
SBS Chr7 7081012 C-T Hetero INTERGENIC
SBS Chr7 21920525 G-T Homo INTERGENIC
SBS Chr8 23158712 G-A Hetero INTERGENIC
SBS Chr8 23226984 A-C Hetero SYNONYMOUS_CODING
SBS Chr8 28769093 C-A Hetero INTERGENIC
SBS Chr9 8706357 A-T Hetero INTERGENIC
SBS Chr10 3312391 C-T Hetero INTERGENIC
SBS Chr10 4725185 G-T Hetero INTERGENIC
SBS Chr10 16974943 T-C Hetero INTERGENIC
SBS Chr10 19992965 C-T Hetero INTERGENIC
SBS Chr11 15014059 A-T Hetero INTERGENIC
SBS Chr11 15295156 C-T Homo INTERGENIC
SBS Chr12 6930820 T-A Hetero INTRON
SBS Chr12 21984749 G-A Homo NON_SYNONYMOUS_CODING OsKitaake12g172500
SBS Chr12 21984750 G-A Homo SYNONYMOUS_CODING

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 40845 40846 1
Deletion Chr9 3214713 3214714 1
Deletion Chr12 8900280 8900282 2
Deletion Chr4 11545001 11565000 19999
Deletion Chr11 11545979 11545981 2
Deletion Chr5 12640001 12693000 52999 OsKitaake05g098900
Deletion Chr4 13171382 13171383 1
Deletion Chr3 13571481 13571516 35
Deletion Chr11 13573001 13603000 29999 2
Deletion Chr8 14716001 14734000 17999
Deletion Chr1 16958182 16958184 2
Deletion Chr8 17214001 17254000 39999 OsKitaake08g130800
Deletion Chr4 18237001 18257000 19999 2
Deletion Chr8 18973331 18973332 1
Deletion Chr4 20023231 20023233 2
Deletion Chr7 20847476 20847482 6
Deletion Chr2 31021084 31021094 10
Deletion Chr2 36493001 36514000 20999 6

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 22725812 22725815 2
Insertion Chr3 9079203 9079206 2
Insertion Chr6 4713372 4713375 2
Insertion Chr6 25150518 25150521 2
Insertion Chr4 10496893 10496945 51

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 9679583 Chr3 23044440 OsKitaake03g249000
Translocation Chr10 9679588 Chr3 23044020 OsKitaake03g249000
Translocation Chr11 11545361 Chr2 36467899 OsKitaake11g108800
Translocation Chr11 23991872 Chr2 36490896 OsKitaake11g192700
Translocation Chr11 23991877 Chr3 35993300 OsKitaake11g192700
Translocation Chr11 23992190 Chr3 35993294 OsKitaake11g192700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2489515	G-A	Hetero	INTERGENIC
SBS	Chr1	2489516	C-A	Hetero	INTERGENIC
SBS	Chr1	11184526	C-T	Homo	INTERGENIC
SBS	Chr2	18451757	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr2	18451758	C-T	Hetero	STOP_GAINED	OsKitaake02g182900
SBS	Chr2	19034426	G-A	Hetero	INTERGENIC
SBS	Chr2	20025776	A-T	Hetero	UTR_5_PRIME
SBS	Chr2	20430338	T-G	Hetero	INTERGENIC
SBS	Chr2	21605013	C-T	Hetero	INTERGENIC
SBS	Chr3	7675126	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g106400
SBS	Chr3	13608930	A-G	Homo	INTERGENIC
SBS	Chr3	17944496	G-A	Homo	INTERGENIC
SBS	Chr3	20779534	C-T	Homo	INTERGENIC
SBS	Chr3	20779535	A-T	Homo	INTERGENIC
SBS	Chr3	29573344	C-T	Homo	INTRON
SBS	Chr3	37218759	C-T	Hetero	INTRON
SBS	Chr4	9659827	T-A	Hetero	INTERGENIC
SBS	Chr4	20141022	T-C	Hetero	INTERGENIC
SBS	Chr5	23004689	C-T	Hetero	INTERGENIC
SBS	Chr6	18546243	G-A	Hetero	INTERGENIC
SBS	Chr7	201019	A-G	Hetero	INTERGENIC
SBS	Chr7	7081012	C-T	Hetero	INTERGENIC
SBS	Chr7	21920525	G-T	Homo	INTERGENIC
SBS	Chr8	23158712	G-A	Hetero	INTERGENIC
SBS	Chr8	23226984	A-C	Hetero	SYNONYMOUS_CODING
SBS	Chr8	28769093	C-A	Hetero	INTERGENIC
SBS	Chr9	8706357	A-T	Hetero	INTERGENIC
SBS	Chr10	3312391	C-T	Hetero	INTERGENIC
SBS	Chr10	4725185	G-T	Hetero	INTERGENIC
SBS	Chr10	16974943	T-C	Hetero	INTERGENIC
SBS	Chr10	19992965	C-T	Hetero	INTERGENIC
SBS	Chr11	15014059	A-T	Hetero	INTERGENIC
SBS	Chr11	15295156	C-T	Homo	INTERGENIC
SBS	Chr12	6930820	T-A	Hetero	INTRON
SBS	Chr12	21984749	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g172500
SBS	Chr12	21984750	G-A	Homo	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	40845	40846	1
Deletion	Chr9	3214713	3214714	1
Deletion	Chr12	8900280	8900282	2
Deletion	Chr4	11545001	11565000	19999
Deletion	Chr11	11545979	11545981	2
Deletion	Chr5	12640001	12693000	52999	OsKitaake05g098900
Deletion	Chr4	13171382	13171383	1
Deletion	Chr3	13571481	13571516	35
Deletion	Chr11	13573001	13603000	29999	2
Deletion	Chr8	14716001	14734000	17999
Deletion	Chr1	16958182	16958184	2
Deletion	Chr8	17214001	17254000	39999	OsKitaake08g130800
Deletion	Chr4	18237001	18257000	19999	2
Deletion	Chr8	18973331	18973332	1
Deletion	Chr4	20023231	20023233	2
Deletion	Chr7	20847476	20847482	6
Deletion	Chr2	31021084	31021094	10
Deletion	Chr2	36493001	36514000	20999	6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	9679583	Chr3	23044440	OsKitaake03g249000
Translocation	Chr10	9679588	Chr3	23044020	OsKitaake03g249000
Translocation	Chr11	11545361	Chr2	36467899	OsKitaake11g108800
Translocation	Chr11	23991872	Chr2	36490896	OsKitaake11g192700
Translocation	Chr11	23991877	Chr3	35993300	OsKitaake11g192700
Translocation	Chr11	23992190	Chr3	35993294	OsKitaake11g192700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes