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Mutant Information

Mutant Name	FN2970-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2970-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 21980311 G-A Homo INTERGENIC
SBS Chr1 40449760 T-A Hetero INTERGENIC
SBS Chr1 40449765 T-A Hetero INTERGENIC
SBS Chr1 41535322 C-A Hetero INTERGENIC
SBS Chr2 14909547 G-T Hetero INTERGENIC
SBS Chr2 16221230 G-A Hetero INTERGENIC
SBS Chr2 27051622 C-A Homo INTERGENIC
SBS Chr2 29285353 C-T Homo SYNONYMOUS_CODING
SBS Chr2 30011713 C-T Homo INTRON
SBS Chr3 9901263 C-G Hetero INTERGENIC
SBS Chr3 18515440 C-T Hetero INTERGENIC
SBS Chr3 21070541 G-A Hetero INTERGENIC
SBS Chr3 21255504 A-T Hetero INTERGENIC
SBS Chr3 28548466 T-C Homo INTERGENIC
SBS Chr4 2002179 G-C Hetero INTERGENIC
SBS Chr4 5389533 C-T Homo INTERGENIC
SBS Chr4 18487188 A-C Homo INTRON
SBS Chr4 34152187 G-C Hetero INTERGENIC
SBS Chr4 35947450 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g308500
SBS Chr4 36932204 C-T Hetero INTERGENIC
SBS Chr5 151036 G-A Hetero INTERGENIC
SBS Chr5 18676701 T-C Hetero INTERGENIC
SBS Chr5 20645164 T-A Hetero INTERGENIC
SBS Chr6 1278346 G-A Hetero INTERGENIC
SBS Chr6 7708872 C-T Hetero INTERGENIC
SBS Chr8 9247273 G-A Homo INTERGENIC
SBS Chr9 9517657 T-G Hetero INTERGENIC
SBS Chr9 12553123 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g082800
SBS Chr9 12593417 A-G Homo INTRON
SBS Chr9 17012137 G-A Homo INTERGENIC
SBS Chr9 19610613 G-T Homo SYNONYMOUS_CODING
SBS Chr9 19610614 C-T Homo NON_SYNONYMOUS_CODING OsKitaake09g160300
SBS Chr9 20724805 G-A Homo INTERGENIC
SBS Chr10 14451274 T-C Hetero INTERGENIC
SBS Chr11 6478766 C-A Homo NON_SYNONYMOUS_CODING OsKitaake11g077000
SBS Chr11 6478767 T-C Homo NON_SYNONYMOUS_CODING OsKitaake11g077000
SBS Chr11 6478768 C-A Homo NON_SYNONYMOUS_CODING OsKitaake11g077000
SBS Chr11 8786565 T-C Hetero INTERGENIC
SBS Chr11 15734856 C-T Hetero INTERGENIC
SBS Chr11 15978446 C-T Hetero INTERGENIC
SBS Chr11 18974237 C-A Hetero INTERGENIC

Deletions: 55

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 641001 661000 19999 OsKitaake09g004500
Deletion Chr11 964001 988000 23999 5
Deletion Chr12 1180001 1196000 15999
Deletion Chr1 4040901 4040903 2
Deletion Chr11 4533001 4544000 10999 OsKitaake11g060300
Deletion Chr10 4939001 4984000 44999 OsKitaake10g036200
Deletion Chr9 5387001 5403000 15999 OsKitaake09g030900
Deletion Chr4 5709578 5709593 15
Deletion Chr7 6047001 6076000 28999
Deletion Chr5 7151983 7151984 1
Deletion Chr4 7268001 7288000 19999
Deletion Chr9 7336001 7356000 19999 OsKitaake09g042001
Deletion Chr5 8223001 8240000 16999
Deletion Chr11 8419179 8419182 3
Deletion Chr7 8595001 8607000 11999 OsKitaake07g092250
Deletion Chr9 8712120 8712129 9
Deletion Chr6 8758001 8772000 13999
Deletion Chr11 8866220 8866221 1
Deletion Chr8 9275017 9275026 9
Deletion Chr2 10154365 10154366 1
Deletion Chr5 10765364 10765365 1
Deletion Chr4 11283001 11295000 11999
Deletion Chr2 11342001 11378000 35999 OsKitaake02g131900
Deletion Chr4 11435001 11458000 22999
Deletion Chr11 11540891 11540895 4
Deletion Chr6 11735001 11743000 7999 OsKitaake06g128000
Deletion Chr5 11939001 12037000 97999 3
Deletion Chr5 12221001 12230000 8999
Deletion Chr10 12710214 12710221 7
Deletion Chr12 13804001 13829000 24999 OsKitaake12g113400
Deletion Chr6 14574001 14611000 36999 2
Deletion Chr4 14878001 14907000 28999 2
Deletion Chr12 14901909 14901913 4
Deletion Chr5 15230001 15241000 10999
Deletion Chr8 16061001 16078000 16999
Deletion Chr2 16077001 16086000 8999 OsKitaake02g166300
Deletion Chr5 16955822 16955834 12
Deletion Chr5 17452001 17468000 15999
Deletion Chr8 18388001 18425000 36999 OsKitaake08g136900
Deletion Chr3 18688001 18714000 25999 OsKitaake03g225500
Deletion Chr8 19239001 19271000 31999
Deletion Chr4 19285001 19297000 11999
Deletion Chr5 20487001 20618000 130999 15
Deletion Chr10 20653030 20653037 7
Deletion Chr3 21228001 21244000 15999 2
Deletion Chr8 21272001 21284000 11999
Deletion Chr6 21845001 21864000 18999
Deletion Chr9 22267001 22320000 52999 7
Deletion Chr11 22635238 22635239 1
Deletion Chr12 22871989 22871994 5
Deletion Chr7 26150864 26150877 13
Deletion Chr11 29683762 29683763 1
Deletion Chr3 31272001 31298000 25999 4
Deletion Chr2 32571001 32639000 67999 10
Deletion Chr4 33106001 33121000 14999 2

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 21780872 21780876 3
Insertion Chr1 29707019 29707024 4
Insertion Chr7 11598735 11598737 1
Insertion Chr8 28851923 28851926 2
Insertion Chr11 6935182 6935186 3
Insertion Chr11 24769631 24769634 2
Insertion Chr7 29596810 29596813 2

Translocations: 9

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 4098769 Chr4 34768857 OsKitaake12g056001
Translocation Chr12 4099313 Chr4 34768856 OsKitaake12g056001
Translocation Chr11 10295985 Chr3 20390642
Translocation Chr11 11169923 Chr1 17979496 OsKitaake01g182400
Translocation Chr11 11170360 Chr1 17979478 OsKitaake01g182400
Translocation Chr11 19564708 Chr2 32572209
Translocation Chr11 19564714 Chr2 32618169 OsKitaake02g333500
Translocation Chr8 28993400 Chr7 911506 2
Translocation Chr8 28993414 Chr7 911513 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21980311	G-A	Homo	INTERGENIC
SBS	Chr1	40449760	T-A	Hetero	INTERGENIC
SBS	Chr1	40449765	T-A	Hetero	INTERGENIC
SBS	Chr1	41535322	C-A	Hetero	INTERGENIC
SBS	Chr2	14909547	G-T	Hetero	INTERGENIC
SBS	Chr2	16221230	G-A	Hetero	INTERGENIC
SBS	Chr2	27051622	C-A	Homo	INTERGENIC
SBS	Chr2	29285353	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr2	30011713	C-T	Homo	INTRON
SBS	Chr3	9901263	C-G	Hetero	INTERGENIC
SBS	Chr3	18515440	C-T	Hetero	INTERGENIC
SBS	Chr3	21070541	G-A	Hetero	INTERGENIC
SBS	Chr3	21255504	A-T	Hetero	INTERGENIC
SBS	Chr3	28548466	T-C	Homo	INTERGENIC
SBS	Chr4	2002179	G-C	Hetero	INTERGENIC
SBS	Chr4	5389533	C-T	Homo	INTERGENIC
SBS	Chr4	18487188	A-C	Homo	INTRON
SBS	Chr4	34152187	G-C	Hetero	INTERGENIC
SBS	Chr4	35947450	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g308500
SBS	Chr4	36932204	C-T	Hetero	INTERGENIC
SBS	Chr5	151036	G-A	Hetero	INTERGENIC
SBS	Chr5	18676701	T-C	Hetero	INTERGENIC
SBS	Chr5	20645164	T-A	Hetero	INTERGENIC
SBS	Chr6	1278346	G-A	Hetero	INTERGENIC
SBS	Chr6	7708872	C-T	Hetero	INTERGENIC
SBS	Chr8	9247273	G-A	Homo	INTERGENIC
SBS	Chr9	9517657	T-G	Hetero	INTERGENIC
SBS	Chr9	12553123	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g082800
SBS	Chr9	12593417	A-G	Homo	INTRON
SBS	Chr9	17012137	G-A	Homo	INTERGENIC
SBS	Chr9	19610613	G-T	Homo	SYNONYMOUS_CODING
SBS	Chr9	19610614	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g160300
SBS	Chr9	20724805	G-A	Homo	INTERGENIC
SBS	Chr10	14451274	T-C	Hetero	INTERGENIC
SBS	Chr11	6478766	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g077000
SBS	Chr11	6478767	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g077000
SBS	Chr11	6478768	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g077000
SBS	Chr11	8786565	T-C	Hetero	INTERGENIC
SBS	Chr11	15734856	C-T	Hetero	INTERGENIC
SBS	Chr11	15978446	C-T	Hetero	INTERGENIC
SBS	Chr11	18974237	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	641001	661000	19999	OsKitaake09g004500
Deletion	Chr11	964001	988000	23999	5
Deletion	Chr12	1180001	1196000	15999
Deletion	Chr1	4040901	4040903	2
Deletion	Chr11	4533001	4544000	10999	OsKitaake11g060300
Deletion	Chr10	4939001	4984000	44999	OsKitaake10g036200
Deletion	Chr9	5387001	5403000	15999	OsKitaake09g030900
Deletion	Chr4	5709578	5709593	15
Deletion	Chr7	6047001	6076000	28999
Deletion	Chr5	7151983	7151984	1
Deletion	Chr4	7268001	7288000	19999
Deletion	Chr9	7336001	7356000	19999	OsKitaake09g042001
Deletion	Chr5	8223001	8240000	16999
Deletion	Chr11	8419179	8419182	3
Deletion	Chr7	8595001	8607000	11999	OsKitaake07g092250
Deletion	Chr9	8712120	8712129	9
Deletion	Chr6	8758001	8772000	13999
Deletion	Chr11	8866220	8866221	1
Deletion	Chr8	9275017	9275026	9
Deletion	Chr2	10154365	10154366	1
Deletion	Chr5	10765364	10765365	1
Deletion	Chr4	11283001	11295000	11999
Deletion	Chr2	11342001	11378000	35999	OsKitaake02g131900
Deletion	Chr4	11435001	11458000	22999
Deletion	Chr11	11540891	11540895	4
Deletion	Chr6	11735001	11743000	7999	OsKitaake06g128000
Deletion	Chr5	11939001	12037000	97999	3
Deletion	Chr5	12221001	12230000	8999
Deletion	Chr10	12710214	12710221	7
Deletion	Chr12	13804001	13829000	24999	OsKitaake12g113400
Deletion	Chr6	14574001	14611000	36999	2
Deletion	Chr4	14878001	14907000	28999	2
Deletion	Chr12	14901909	14901913	4
Deletion	Chr5	15230001	15241000	10999
Deletion	Chr8	16061001	16078000	16999
Deletion	Chr2	16077001	16086000	8999	OsKitaake02g166300
Deletion	Chr5	16955822	16955834	12
Deletion	Chr5	17452001	17468000	15999
Deletion	Chr8	18388001	18425000	36999	OsKitaake08g136900
Deletion	Chr3	18688001	18714000	25999	OsKitaake03g225500
Deletion	Chr8	19239001	19271000	31999
Deletion	Chr4	19285001	19297000	11999
Deletion	Chr5	20487001	20618000	130999	15
Deletion	Chr10	20653030	20653037	7
Deletion	Chr3	21228001	21244000	15999	2
Deletion	Chr8	21272001	21284000	11999
Deletion	Chr6	21845001	21864000	18999
Deletion	Chr9	22267001	22320000	52999	7
Deletion	Chr11	22635238	22635239	1
Deletion	Chr12	22871989	22871994	5
Deletion	Chr7	26150864	26150877	13
Deletion	Chr11	29683762	29683763	1
Deletion	Chr3	31272001	31298000	25999	4
Deletion	Chr2	32571001	32639000	67999	10
Deletion	Chr4	33106001	33121000	14999	2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	4098769	Chr4	34768857	OsKitaake12g056001
Translocation	Chr12	4099313	Chr4	34768856	OsKitaake12g056001
Translocation	Chr11	10295985	Chr3	20390642
Translocation	Chr11	11169923	Chr1	17979496	OsKitaake01g182400
Translocation	Chr11	11170360	Chr1	17979478	OsKitaake01g182400
Translocation	Chr11	19564708	Chr2	32572209
Translocation	Chr11	19564714	Chr2	32618169	OsKitaake02g333500
Translocation	Chr8	28993400	Chr7	911506	2
Translocation	Chr8	28993414	Chr7	911513	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes