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Mutant Information

Mutant Name	FN2979-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2979-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7248344 G-A Hetero INTRON
SBS Chr1 8444470 T-A Hetero INTERGENIC
SBS Chr1 14500314 C-T Hetero INTERGENIC
SBS Chr1 25871031 G-A Hetero INTERGENIC
SBS Chr1 30127099 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g297000
SBS Chr1 41763826 G-A Hetero INTERGENIC
SBS Chr2 3671755 C-T Homo INTERGENIC
SBS Chr2 26814591 G-A Hetero INTERGENIC
SBS Chr3 22877272 T-C Hetero INTERGENIC
SBS Chr3 27832884 C-T Hetero INTERGENIC
SBS Chr4 16463598 G-A Hetero INTERGENIC
SBS Chr4 19276104 G-A Hetero INTERGENIC
SBS Chr4 26553912 G-T Hetero INTERGENIC
SBS Chr5 8015330 G-C Homo INTERGENIC
SBS Chr5 9361270 T-A Homo INTERGENIC
SBS Chr5 21423092 T-A Hetero INTERGENIC
SBS Chr5 21423093 A-G Hetero INTERGENIC
SBS Chr5 28241580 G-A Hetero INTRON
SBS Chr6 10850767 C-T Hetero INTERGENIC
SBS Chr6 22659644 C-T Homo INTERGENIC
SBS Chr6 28915552 A-G Hetero INTERGENIC
SBS Chr6 29416659 G-A Hetero SYNONYMOUS_CODING
SBS Chr7 27634715 G-A Homo INTERGENIC
SBS Chr9 7391404 C-A Hetero INTRON
SBS Chr9 7877656 A-T Hetero INTRON
SBS Chr9 12748383 C-A Hetero INTERGENIC
SBS Chr9 17010126 G-A Hetero INTERGENIC
SBS Chr10 3864565 T-C Homo INTERGENIC
SBS Chr10 14670467 G-T Homo INTERGENIC
SBS Chr11 2937472 C-T Hetero INTERGENIC
SBS Chr11 24385621 G-A Homo INTERGENIC
SBS Chr11 25096756 C-T Homo INTERGENIC
SBS Chr11 28358499 C-T Homo INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 7636001 7666000 29999 OsKitaake12g083000
Deletion Chr3 9543001 9564000 20999 5
Deletion Chr9 10589001 10621000 31999 2
Deletion Chr6 11571001 11589000 17999
Deletion Chr5 12645001 12692000 46999 OsKitaake05g098900
Deletion Chr7 13059001 13076000 16999 OsKitaake07g115400
Deletion Chr5 13489124 13489125 1
Deletion Chr5 13554154 13554156 2
Deletion Chr8 18076001 18114000 37999 OsKitaake08g134500
Deletion Chr1 27377075 27377083 8
Deletion Chr1 39340001 39421000 80999 10
Deletion Chr1 39557001 39666000 108999 13

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 30355121 30355124 2
Insertion Chr10 1175187 1175190 2
Insertion Chr11 26692277 26692280 2
Insertion Chr4 22525662 22525665 2
Insertion Chr8 1411838 1411840 1
Insertion Chr8 8960664 8960673 8

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 12769141 12954685
Inversion Chr7 12769148 12954687

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 25379983 Chr3 30123922 OsKitaake04g173600
Translocation Chr4 25379993 Chr3 30123916 OsKitaake04g173600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7248344	G-A	Hetero	INTRON
SBS	Chr1	8444470	T-A	Hetero	INTERGENIC
SBS	Chr1	14500314	C-T	Hetero	INTERGENIC
SBS	Chr1	25871031	G-A	Hetero	INTERGENIC
SBS	Chr1	30127099	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g297000
SBS	Chr1	41763826	G-A	Hetero	INTERGENIC
SBS	Chr2	3671755	C-T	Homo	INTERGENIC
SBS	Chr2	26814591	G-A	Hetero	INTERGENIC
SBS	Chr3	22877272	T-C	Hetero	INTERGENIC
SBS	Chr3	27832884	C-T	Hetero	INTERGENIC
SBS	Chr4	16463598	G-A	Hetero	INTERGENIC
SBS	Chr4	19276104	G-A	Hetero	INTERGENIC
SBS	Chr4	26553912	G-T	Hetero	INTERGENIC
SBS	Chr5	8015330	G-C	Homo	INTERGENIC
SBS	Chr5	9361270	T-A	Homo	INTERGENIC
SBS	Chr5	21423092	T-A	Hetero	INTERGENIC
SBS	Chr5	21423093	A-G	Hetero	INTERGENIC
SBS	Chr5	28241580	G-A	Hetero	INTRON
SBS	Chr6	10850767	C-T	Hetero	INTERGENIC
SBS	Chr6	22659644	C-T	Homo	INTERGENIC
SBS	Chr6	28915552	A-G	Hetero	INTERGENIC
SBS	Chr6	29416659	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr7	27634715	G-A	Homo	INTERGENIC
SBS	Chr9	7391404	C-A	Hetero	INTRON
SBS	Chr9	7877656	A-T	Hetero	INTRON
SBS	Chr9	12748383	C-A	Hetero	INTERGENIC
SBS	Chr9	17010126	G-A	Hetero	INTERGENIC
SBS	Chr10	3864565	T-C	Homo	INTERGENIC
SBS	Chr10	14670467	G-T	Homo	INTERGENIC
SBS	Chr11	2937472	C-T	Hetero	INTERGENIC
SBS	Chr11	24385621	G-A	Homo	INTERGENIC
SBS	Chr11	25096756	C-T	Homo	INTERGENIC
SBS	Chr11	28358499	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	7636001	7666000	29999	OsKitaake12g083000
Deletion	Chr3	9543001	9564000	20999	5
Deletion	Chr9	10589001	10621000	31999	2
Deletion	Chr6	11571001	11589000	17999
Deletion	Chr5	12645001	12692000	46999	OsKitaake05g098900
Deletion	Chr7	13059001	13076000	16999	OsKitaake07g115400
Deletion	Chr5	13489124	13489125	1
Deletion	Chr5	13554154	13554156	2
Deletion	Chr8	18076001	18114000	37999	OsKitaake08g134500
Deletion	Chr1	27377075	27377083	8
Deletion	Chr1	39340001	39421000	80999	10
Deletion	Chr1	39557001	39666000	108999	13

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	12769141	12954685
Inversion	Chr7	12769148	12954687

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes