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| Mutant Information |
|---|
| Mutant Name | FN2986-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2986-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 5691102 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 6820934 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g086100 |
| SBS | Chr1 | 21396581 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 22696211 | A-C | Homo | INTERGENIC | |
| SBS | Chr1 | 31213990 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 34457324 | C-T | Hetero | INTRON | |
| SBS | Chr1 | 39933627 | A-G | Hetero | INTRON | |
| SBS | Chr2 | 1400818 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 24815213 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 35788732 | A-T | Homo | INTERGENIC | |
| SBS | Chr3 | 6969495 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 10025590 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 29391558 | T-A | Homo | INTRON | |
| SBS | Chr4 | 32923866 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 20482928 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 20482930 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 17345965 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 25790382 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 1796473 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 2716331 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 13793358 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 7274866 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 17255663 | C-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 18589878 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 20167866 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 20180771 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 706592 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 4504760 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 14303382 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 23613763 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 8948932 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 21373872 | G-A | Homo | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 4979658 | 4979659 | 1 | |
| Deletion | Chr1 | 11735798 | 11735800 | 2 | |
| Deletion | Chr2 | 12936001 | 13015000 | 78999 | 4 |
| Deletion | Chr6 | 14902001 | 14924000 | 21999 | OsKitaake06g150500 |
| Deletion | Chr6 | 14930001 | 15235000 | 304999 | 9 |
| Deletion | Chr6 | 15450001 | 15734000 | 283999 | 9 |
| Deletion | Chr1 | 17186822 | 17186987 | 165 | |
| Deletion | Chr2 | 28124839 | 28124842 | 3 | OsKitaake02g283701 |
| Deletion | Chr7 | 28629867 | 28629870 | 3 | |
| Deletion | Chr4 | 29487026 | 29487030 | 4 | |
| Deletion | Chr2 | 29914151 | 29914152 | 1 | |
| Deletion | Chr4 | 31543695 | 31543699 | 4 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 2252084 | 2252087 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr9 | 8764449 | 8865630 | OsKitaake09g051900 |
| Inversion | Chr9 | 8764491 | 8865649 | OsKitaake09g051900 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 2183351 | Chr2 | 30454336 | |
| Translocation | Chr12 | 2183685 | Chr11 | 11951598 | |
| Translocation | Chr11 | 11953086 | Chr8 | 25001691 | |
| Translocation | Chr8 | 25001922 | Chr2 | 30454340 |