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Mutant Information

Mutant Name	FN2990-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2990-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 20560409 G-T Hetero INTERGENIC
SBS Chr1 43317688 A-T Homo INTRON
SBS Chr2 19401098 T-A Hetero INTERGENIC
SBS Chr2 32444010 C-T Homo INTERGENIC
SBS Chr2 32444015 C-T Homo INTERGENIC
SBS Chr2 34059389 C-T Hetero STOP_GAINED OsKitaake02g353800
SBS Chr3 8478894 T-A Hetero INTERGENIC
SBS Chr3 19752527 A-G Hetero INTERGENIC
SBS Chr3 31379579 C-A Homo INTERGENIC
SBS Chr3 33592475 G-A Hetero INTERGENIC
SBS Chr4 14395 G-A Hetero INTERGENIC
SBS Chr4 12086699 A-G Homo INTRON
SBS Chr4 12126331 T-C Homo INTERGENIC
SBS Chr4 12739587 G-T Homo INTERGENIC
SBS Chr4 22100461 G-T Homo INTERGENIC
SBS Chr6 6212069 A-T Hetero INTERGENIC
SBS Chr7 10344259 C-T Hetero INTERGENIC
SBS Chr7 11679000 A-C Hetero INTERGENIC
SBS Chr7 14813910 A-G Hetero UTR_3_PRIME
SBS Chr7 16916497 C-G Homo INTERGENIC
SBS Chr7 20826964 A-G Homo INTERGENIC
SBS Chr8 12380941 A-T Homo INTERGENIC
SBS Chr8 22713650 T-G Homo INTERGENIC
SBS Chr9 4276918 G-T Homo INTERGENIC
SBS Chr9 20525722 A-G Hetero INTERGENIC
SBS Chr9 20533379 A-T Hetero INTERGENIC
SBS Chr9 20533380 A-T Hetero INTERGENIC
SBS Chr9 21955309 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g195200
SBS Chr9 22652352 C-T Hetero INTERGENIC
SBS Chr10 2096369 A-T Homo INTERGENIC
SBS Chr10 2685449 G-C Homo INTERGENIC
SBS Chr11 12108776 G-A Hetero INTERGENIC
SBS Chr12 8119931 G-A Hetero INTERGENIC
SBS Chr12 8119932 G-A Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 165386 165388 2
Deletion Chr4 2450267 2450272 5
Deletion Chr9 8500001 8599000 98999 5
Deletion Chr4 10808985 10808988 3
Deletion Chr5 14329035 14329037 2
Deletion Chr3 15795714 15795734 20
Deletion Chr4 16706211 16706218 7
Deletion Chr5 18435750 18435756 6
Deletion Chr10 19471157 19471158 1
Deletion Chr2 20446086 20446089 3
Deletion Chr8 23853262 23853263 1
Deletion Chr4 25372167 25372172 5 OsKitaake04g173400
Deletion Chr2 32809157 32809171 14
Deletion Chr4 32961813 32961818 5
Deletion Chr2 34059966 34059978 12 OsKitaake02g353800
Deletion Chr2 35565978 35565979 1 OsKitaake02g373600
Deletion Chr1 39158583 39158588 5

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 17406277 17406281 3
Insertion Chr3 26082319 26082322 2
Insertion Chr7 2453767 2453769 1
Insertion Chr10 7363173 7363176 2
Insertion Chr11 24305624 24305628 3

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 10357878 10374321 OsKitaake04g055000
Inversion Chr7 20832648 20851587 OsKitaake07g172100
Inversion Chr7 20832650 20851588 OsKitaake07g172100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20560409	G-T	Hetero	INTERGENIC
SBS	Chr1	43317688	A-T	Homo	INTRON
SBS	Chr2	19401098	T-A	Hetero	INTERGENIC
SBS	Chr2	32444010	C-T	Homo	INTERGENIC
SBS	Chr2	32444015	C-T	Homo	INTERGENIC
SBS	Chr2	34059389	C-T	Hetero	STOP_GAINED	OsKitaake02g353800
SBS	Chr3	8478894	T-A	Hetero	INTERGENIC
SBS	Chr3	19752527	A-G	Hetero	INTERGENIC
SBS	Chr3	31379579	C-A	Homo	INTERGENIC
SBS	Chr3	33592475	G-A	Hetero	INTERGENIC
SBS	Chr4	14395	G-A	Hetero	INTERGENIC
SBS	Chr4	12086699	A-G	Homo	INTRON
SBS	Chr4	12126331	T-C	Homo	INTERGENIC
SBS	Chr4	12739587	G-T	Homo	INTERGENIC
SBS	Chr4	22100461	G-T	Homo	INTERGENIC
SBS	Chr6	6212069	A-T	Hetero	INTERGENIC
SBS	Chr7	10344259	C-T	Hetero	INTERGENIC
SBS	Chr7	11679000	A-C	Hetero	INTERGENIC
SBS	Chr7	14813910	A-G	Hetero	UTR_3_PRIME
SBS	Chr7	16916497	C-G	Homo	INTERGENIC
SBS	Chr7	20826964	A-G	Homo	INTERGENIC
SBS	Chr8	12380941	A-T	Homo	INTERGENIC
SBS	Chr8	22713650	T-G	Homo	INTERGENIC
SBS	Chr9	4276918	G-T	Homo	INTERGENIC
SBS	Chr9	20525722	A-G	Hetero	INTERGENIC
SBS	Chr9	20533379	A-T	Hetero	INTERGENIC
SBS	Chr9	20533380	A-T	Hetero	INTERGENIC
SBS	Chr9	21955309	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g195200
SBS	Chr9	22652352	C-T	Hetero	INTERGENIC
SBS	Chr10	2096369	A-T	Homo	INTERGENIC
SBS	Chr10	2685449	G-C	Homo	INTERGENIC
SBS	Chr11	12108776	G-A	Hetero	INTERGENIC
SBS	Chr12	8119931	G-A	Hetero	INTERGENIC
SBS	Chr12	8119932	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	165386	165388	2
Deletion	Chr4	2450267	2450272	5
Deletion	Chr9	8500001	8599000	98999	5
Deletion	Chr4	10808985	10808988	3
Deletion	Chr5	14329035	14329037	2
Deletion	Chr3	15795714	15795734	20
Deletion	Chr4	16706211	16706218	7
Deletion	Chr5	18435750	18435756	6
Deletion	Chr10	19471157	19471158	1
Deletion	Chr2	20446086	20446089	3
Deletion	Chr8	23853262	23853263	1
Deletion	Chr4	25372167	25372172	5	OsKitaake04g173400
Deletion	Chr2	32809157	32809171	14
Deletion	Chr4	32961813	32961818	5
Deletion	Chr2	34059966	34059978	12	OsKitaake02g353800
Deletion	Chr2	35565978	35565979	1	OsKitaake02g373600
Deletion	Chr1	39158583	39158588	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	10357878	10374321	OsKitaake04g055000
Inversion	Chr7	20832648	20851587	OsKitaake07g172100
Inversion	Chr7	20832650	20851588	OsKitaake07g172100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes