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| Mutant Information |
|---|
| Mutant Name | FN2991-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2991-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 21246284 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 35379604 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 33721230 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 161370 | G-C | Homo | INTERGENIC | |
| SBS | Chr3 | 5929484 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 6692374 | G-A | Hetero | INTRON | |
| SBS | Chr4 | 5608038 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 9334477 | T-A | Hetero | INTRON | |
| SBS | Chr4 | 10830301 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 11796075 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 17700163 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 21238964 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 7477849 | A-T | Homo | INTERGENIC | |
| SBS | Chr5 | 10154307 | A-G | Homo | INTERGENIC | |
| SBS | Chr5 | 10535237 | C-A | Homo | INTERGENIC | |
| SBS | Chr5 | 22414578 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 22780334 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 29935288 | T-C | Homo | INTERGENIC | |
| SBS | Chr6 | 19008856 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 28577116 | T-A | Homo | INTERGENIC | |
| SBS | Chr8 | 4127657 | G-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake08g046700 |
| SBS | Chr8 | 4667750 | T-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake08g052900 |
| SBS | Chr8 | 13259871 | T-C | Homo | INTERGENIC | |
| SBS | Chr10 | 7197242 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 7589863 | C-T | Homo | INTRON | |
| SBS | Chr11 | 20189939 | T-C | Homo | INTERGENIC | |
| SBS | Chr12 | 10668153 | T-C | Hetero | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 3720192 | 3720193 | 1 | |
| Deletion | Chr1 | 6949905 | 6949915 | 10 | |
| Deletion | Chr5 | 7516456 | 7516462 | 6 | |
| Deletion | Chr5 | 7556334 | 7556353 | 19 | |
| Deletion | Chr12 | 7679353 | 7679354 | 1 | |
| Deletion | Chr11 | 7930662 | 7930670 | 8 | |
| Deletion | Chr3 | 8297934 | 8297936 | 2 | |
| Deletion | Chr11 | 20094066 | 20094077 | 11 | |
| Deletion | Chr11 | 23479379 | 23479385 | 6 | OsKitaake11g187400 |
| Deletion | Chr7 | 26813523 | 26813524 | 1 | |
| Deletion | Chr4 | 26849491 | 26849500 | 9 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 28057547 | 28057552 | 4 | |
| Insertion | Chr6 | 17849914 | 17849920 | 5 | |
| Insertion | Chr8 | 25620498 | 25620501 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr4 | 26047121 | 26176089 | OsKitaake04g182900 |
| Inversion | Chr4 | 26047137 | 26176093 | OsKitaake04g182900 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 20156964 | Chr6 | 11081802 |