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| Mutant Information |
|---|
| Mutant Name | FN2994-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2994-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 24
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 11852144 | T-A | Homo | INTERGENIC | |
| SBS | Chr2 | 11309536 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 14509198 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 15578175 | A-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 35084354 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 9354819 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 22862811 | C-A | Hetero | INTRON | |
| SBS | Chr3 | 31032796 | A-T | Homo | INTRON | |
| SBS | Chr3 | 37325019 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g418700 |
| SBS | Chr5 | 24988440 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 11314631 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 19299252 | T-C | Homo | INTERGENIC | |
| SBS | Chr7 | 14961832 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 17269142 | T-G | Hetero | INTRON | |
| SBS | Chr7 | 25556870 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 3460636 | A-G | Homo | INTERGENIC | |
| SBS | Chr9 | 3986787 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr9 | 5613852 | G-C | Homo | INTERGENIC | |
| SBS | Chr9 | 13730570 | T-A | Homo | INTERGENIC | |
| SBS | Chr10 | 4001289 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 723288 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 25985421 | G-A | Homo | INTRON | |
| SBS | Chr12 | 8676364 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 17760666 | A-G | Homo | INTERGENIC |
Deletions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 7959444 | 7959451 | 7 | |
| Deletion | Chr11 | 9371479 | 9371483 | 4 | |
| Deletion | Chr4 | 12094713 | 12094714 | 1 | |
| Deletion | Chr9 | 13103869 | 13103883 | 14 | |
| Deletion | Chr4 | 15227447 | 15227448 | 1 | OsKitaake04g073150 |
| Deletion | Chr1 | 24829725 | 24829736 | 11 | |
| Deletion | Chr3 | 33572001 | 33586000 | 13999 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 30602361 | 30602364 | 2 | |
| Insertion | Chr4 | 9890301 | 9890364 | 62 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 25446009 | 25739435 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 8655019 | Chr1 | 25446014 | OsKitaake10g053166 |
| Translocation | Chr10 | 8655272 | Chr1 | 25739435 | OsKitaake10g053166 |
| Translocation | Chr10 | 15513739 | Chr6 | 16826057 | |
| Translocation | Chr10 | 15513750 | Chr6 | 16825701 |